Brachypodium distachyon genomics for sustainable food and fuel production
- PMID: 20362425
- DOI: 10.1016/j.copbio.2010.03.006
Brachypodium distachyon genomics for sustainable food and fuel production
Abstract
Grass crops are the most important sources of human nutrition, and their improvement is centrally important for meeting the challenges of sustainable agriculture, for feeding the world's population and for developing renewable supplies of fuel and industrial products. We describe the complete sequence of the compact genome of Brachypodium distachyon (Brachypodium) the first pooid grass to be sequenced. We demonstrate the many favorable characteristics of Brachypodium as an experimental system and show how it can be used to navigate the large and complex genomes of closely related grasses. The functional genomics and other experimental resources that are being developed will provide a key resource for improving food and forage crops, in particular wheat, barley and forage grasses, and for establishing new grass crops for sustainable energy production.
Copyright 2010 Elsevier Ltd. All rights reserved.
Similar articles
-
Genome sequencing and analysis of the model grass Brachypodium distachyon.Nature. 2010 Feb 11;463(7282):763-8. doi: 10.1038/nature08747. Nature. 2010. PMID: 20148030
-
Exploiting the Brachypodium Tool Box in cereal and grass research.New Phytol. 2011 Jul;191(2):334-347. doi: 10.1111/j.1469-8137.2011.03748.x. Epub 2011 May 31. New Phytol. 2011. PMID: 21623796 Review.
-
An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research.PLoS One. 2010 Oct 18;5(10):e13461. doi: 10.1371/journal.pone.0013461. PLoS One. 2010. PMID: 20976139 Free PMC article.
-
The perennial ryegrass GenomeZipper: targeted use of genome resources for comparative grass genomics.Plant Physiol. 2013 Feb;161(2):571-82. doi: 10.1104/pp.112.207282. Epub 2012 Nov 26. Plant Physiol. 2013. PMID: 23184232 Free PMC article.
-
Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses.Annu Rev Plant Biol. 2015;66:465-85. doi: 10.1146/annurev-arplant-042811-105528. Epub 2015 Jan 22. Annu Rev Plant Biol. 2015. PMID: 25621515 Review.
Cited by
-
Genome-wide identification and analysis of MAPK and MAPKK gene families in Brachypodium distachyon.PLoS One. 2012;7(10):e46744. doi: 10.1371/journal.pone.0046744. Epub 2012 Oct 17. PLoS One. 2012. PMID: 23082129 Free PMC article.
-
Ultrastructure of microsporogenesis and microgametogenesis in Brachypodium distachyon.Protoplasma. 2015 Nov;252(6):1575-86. doi: 10.1007/s00709-015-0793-6. Epub 2015 Mar 15. Protoplasma. 2015. PMID: 25772681
-
Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources.PLoS One. 2013 Oct 9;8(10):e75265. doi: 10.1371/journal.pone.0075265. eCollection 2013. PLoS One. 2013. PMID: 24130698 Free PMC article.
-
Multiplex PCR Targeted Amplicon Sequencing (MTA-Seq): Simple, Flexible, and Versatile SNP Genotyping by Highly Multiplexed PCR Amplicon Sequencing.Front Plant Sci. 2018 Mar 23;9:201. doi: 10.3389/fpls.2018.00201. eCollection 2018. Front Plant Sci. 2018. PMID: 29628929 Free PMC article.
-
Comparative analyses reveal potential uses of Brachypodium distachyon as a model for cold stress responses in temperate grasses.BMC Plant Biol. 2012 May 8;12:65. doi: 10.1186/1471-2229-12-65. BMC Plant Biol. 2012. PMID: 22569006 Free PMC article.
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources