Thermodynamics and energy coupling in the bacteriorhodopsin photocycle
- PMID: 2036368
- DOI: 10.1021/bi00234a025
Thermodynamics and energy coupling in the bacteriorhodopsin photocycle
Abstract
Time-resolved absorption changes of photoexcited bacteriorhodopsin were measured with a gated multichannel analyzer between 100 ns and 100 ms at six temperatures between 5 and 30 degrees C. The energetics of the chromophore reaction cycle were analyzed on the basis of a model containing a single cycle and reversible reactions. The calculated thermodynamic parameters provide insights to general principles of the active transport. They indicate that in this light-driven proton pump the free energy is retained after absorption of the photon as the enthalpy of the pKa shift in the chromophore which allows deprotonation of the Schiff base. Part of the excess free energy is dissipated at the "switch" step where the reaction and transport cycles are coupled, and the rest at the chromophore recovery step. All other reactions take place near equilibrium. The "switch" step is the M1----M2 transition in the reaction cycle [Váró, G., & Lanyi, J. K. (1991) Biochemistry (preceeding paper in this issue)]. It provides for return of the chromophore pKa to its initial value so the Schiff base will become a proton acceptor, for reordering access of the Schiff base from one side of the membrane to the other, and for unidirectionality of the proton transfer. Conformational energy of the protein, acquired during the "switch" step, drives the completion of the photocycle.
Similar articles
-
Reaction cycle and thermodynamics in bacteriorhodopsin.Acta Physiol Scand Suppl. 1992;607:245-8. Acta Physiol Scand Suppl. 1992. PMID: 1449068 Review.
-
Distortions in the photocycle of bacteriorhodopsin at moderate dehydration.Biophys J. 1991 Feb;59(2):313-22. doi: 10.1016/S0006-3495(91)82225-1. Biophys J. 1991. PMID: 2009355 Free PMC article.
-
Kinetic and spectroscopic evidence for an irreversible step between deprotonation and reprotonation of the Schiff base in the bacteriorhodopsin photocycle.Biochemistry. 1991 May 21;30(20):5008-15. doi: 10.1021/bi00234a024. Biochemistry. 1991. PMID: 1645187
-
Proton transfer from Asp-96 to the bacteriorhodopsin Schiff base is caused by a decrease of the pKa of Asp-96 which follows a protein backbone conformational change.Biochemistry. 1993 Mar 2;32(8):1981-90. doi: 10.1021/bi00059a015. Biochemistry. 1993. PMID: 8448157
-
Proton transfer and energy coupling in the bacteriorhodopsin photocycle.J Bioenerg Biomembr. 1992 Apr;24(2):169-79. doi: 10.1007/BF00762675. J Bioenerg Biomembr. 1992. PMID: 1326515 Review.
Cited by
-
A study on the mechanism of the proton transport in bacteriorhodopsin: the importance of the water molecule.Biophys J. 2000 Aug;79(2):982-91. doi: 10.1016/S0006-3495(00)76352-1. Biophys J. 2000. PMID: 10920028 Free PMC article.
-
Structural snapshots of conformational changes in a seven-helix membrane protein: lessons from bacteriorhodopsin.Curr Opin Struct Biol. 2009 Aug;19(4):433-9. doi: 10.1016/j.sbi.2009.07.009. Epub 2009 Jul 28. Curr Opin Struct Biol. 2009. PMID: 19643594 Free PMC article. Review.
-
Subsecond proton-hole propagation in bacteriorhodopsin.Biophys J. 2003 Jan;84(1):671-86. doi: 10.1016/S0006-3495(03)74887-5. Biophys J. 2003. PMID: 12524320 Free PMC article.
-
Fourier transform infrared double-flash experiments resolve bacteriorhodopsin's M1 to M2 transition.Biophys J. 1997 Oct;73(4):2071-80. doi: 10.1016/S0006-3495(97)78237-7. Biophys J. 1997. PMID: 9336202 Free PMC article.
-
Azide reduces the hydrophobic barrier of the bacteriorhodopsin proton channel.Biophys J. 1999 May;76(5):2702-10. doi: 10.1016/S0006-3495(99)77422-9. Biophys J. 1999. PMID: 10233084 Free PMC article.
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Miscellaneous