Water accessibility to the binding cleft as a major switching factor from entropy-driven to enthalpy-driven binding of an alkyl group by synthetic receptors
- PMID: 20379991
- DOI: 10.1002/asia.200900679
Water accessibility to the binding cleft as a major switching factor from entropy-driven to enthalpy-driven binding of an alkyl group by synthetic receptors
Abstract
Free energy, enthalpy, and entropy changes in the binding of alkyl pyridines to water-soluble zinc porphyrin receptors with varying accessibility of water to the binding cleft were determined to explain why the driving force of hydrophobic effects is enthalpic in some occasions and entropic in others. Zinc porphyrins bearing four alkyl pillars with terminal solubilizing poly(oxyethylene) (POE) chains of molecular weight of 750 (1), with eight alkyl pillars with terminal solubilizing POE chains of molecular weight of 350 (3), and with eight alkyl pillars with POE of molecular weight of 750 (4) had a binding cleft with decreasing water accessibility in this order as revealed by binding selectivity of imidazole/pyridine. Although all these porphyrins showed that the free energy of binding (-DeltaG(o)) increases linearly as the alkyl group of the guest is lengthened (-DeltaG(o) per CH(2) was 2.6, 2.8, and 2.6 kJ mol(-1) for 1, 3, and 4, respectively), the origin of the free energy gain was much different. Receptor 1 with the most hydrophilic binding site bound the alkyl group by an enthalpic driving force (4-pentylpyridine favored over 4-methylpyridine by DeltaDeltaH(o)=-16.4 kJ mol(-1)), while receptor 4 with the most hydrophobic binding site by an entropic driving force (4-pentylpyridine favored over 4-methylpyridine by DeltaDeltaS(o)=39.6 J K(-1) mol(-1)). Receptor 3 showed intermediate behavior: both enthalpic and entropic terms drove the binding of the alkyl group with the enthalpic driving force being dominant. The binding site of the four-pillared receptor (1) is open and accessible to water molecules, and is more hydrophilic than that of the eight-pillared receptor (4). We propose that the alkyl chains of 1 are exposed to water to produce a room to accommodate the guest to result in enthalpy-driven hydrophobic binding, whereas 4 can accommodate the guest without such structural changes to lead to entropy-driven hydrophobic binding. Therefore, accessibility of water or exposure of the binding site to the water phase switches the driving force of hydrophobic effects from an entropic force to an enthalpic force.
Similar articles
-
Thermodynamics of hydrophobic interactions: entropic recognition of a hydrophobic moiety by poly(ethylene oxide)-zinc porphyrin conjugates.Chem Asian J. 2007 Oct 1;2(10):1267-75. doi: 10.1002/asia.200700134. Chem Asian J. 2007. PMID: 17691075
-
A new strategy for the design of water-soluble synthetic receptors: specific recognition of DNA intercalators and diamines.Chemistry. 2003 May 23;9(10):2368-80. doi: 10.1002/chem.200204481. Chemistry. 2003. PMID: 12772312
-
Molecular recognition in anisotropic media. Binding of alkylpyridines to amphiphilic zinc porphyrins incorporated in liposomal bilayer membranes.Org Biomol Chem. 2009 Apr 7;7(7):1437-44. doi: 10.1039/b817241b. Epub 2009 Feb 16. Org Biomol Chem. 2009. PMID: 19300830
-
Energetic and entropic factors determining binding affinity in protein-ligand complexes.J Recept Signal Transduct Res. 1997 Jan-May;17(1-3):459-73. doi: 10.3109/10799899709036621. J Recept Signal Transduct Res. 1997. PMID: 9029508 Review.
-
Free energy of ligand binding to protein: evaluation of the contribution of water molecules by computational methods.Curr Med Chem. 2004 Dec;11(23):3093-118. doi: 10.2174/0929867043363929. Curr Med Chem. 2004. PMID: 15579003 Review.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources