Bond lengths in organic and metal-organic compounds revisited: X-H bond lengths from neutron diffraction data
- PMID: 20484809
- DOI: 10.1107/S0108768110012048
Bond lengths in organic and metal-organic compounds revisited: X-H bond lengths from neutron diffraction data
Abstract
The number of structures in the Cambridge Structural Database (CSD) has increased by an order of magnitude since the preparation of two major compilations of standard bond lengths in mid-1985. It is now of interest to examine whether this huge increase in data availability has implications for the mean bond-length values published in the late 1980s. Those compilations reported mean X-H bond lengths derived from rather sparse information and for rather few chemical environments. During the intervening years, the number of neutron studies has also increased, although only by a factor of around 2.25, permitting a new analysis of X-H bond-length distributions for (a) organic X = C, N, O, B, and (b) a variety of terminal and homometallic bridging transition metal hydrides. New mean values are reported here and are compared with earlier results. These new overall means are also complemented by an analysis of X-H distances at lower temperatures (T < or = 140 K), which indicates the general level of librational effects in X-H systems. The study also extends the range of chemical environments for which statistically acceptable mean X-H bond lengths can be obtained, although values from individual structures are also collated to further extend the chemical range of this compilation. Updated default 'neutron-normalization' distances for use in hydrogen-bond and deformation-density studies are also proposed for C-H, N-H and O-H, and the low-temperature analysis provides specific values for certain chemical environments and hybridization states of X.
Similar articles
-
Factors affecting d-block metal-ligand bond lengths: toward an automated library of molecular geometry for metal complexes.J Chem Inf Model. 2005 Nov-Dec;45(6):1727-48. doi: 10.1021/ci0500785. J Chem Inf Model. 2005. PMID: 16309280
-
The determination of protonation states in proteins.Acta Crystallogr D Biol Crystallogr. 2007 Aug;63(Pt 8):906-22. doi: 10.1107/S0907444907029976. Epub 2007 Jul 17. Acta Crystallogr D Biol Crystallogr. 2007. PMID: 17642517
-
Variable temperature neutron diffraction and X-ray charge density studies of tetraacetylethane.J Phys Chem A. 2008 Jul 24;112(29):6667-77. doi: 10.1021/jp800204r. Epub 2008 Jul 1. J Phys Chem A. 2008. PMID: 18593102
-
The physical chemistry of coordinated aqua-, ammine-, and mixed-ligand Co2+ complexes: DFT studies on the structure, energetics, and topological properties of the electron density.Phys Chem Chem Phys. 2010 Mar 7;12(9):2126-38. doi: 10.1039/b919953e. Epub 2010 Jan 14. Phys Chem Chem Phys. 2010. PMID: 20165761
-
Experimental bond critical point and local energy density properties determined for Mn-O, Fe-O, and Co-O bonded interactions for tephroite, Mn2SiO4, fayalite, Fe2SiO4, and Co2SiO4 olivine and selected organic metal complexes: comparison with properties calculated for non-transition and transition metal M-O bonded interactions for silicates and oxides.J Phys Chem A. 2008 Sep 18;112(37):8811-23. doi: 10.1021/jp804280j. Epub 2008 Aug 20. J Phys Chem A. 2008. PMID: 18714960
Cited by
-
Improved joint X-ray and neutron refinement procedure in Phenix.Acta Crystallogr D Struct Biol. 2023 Dec 1;79(Pt 12):1079-1093. doi: 10.1107/S2059798323008914. Epub 2023 Nov 9. Acta Crystallogr D Struct Biol. 2023. PMID: 37942718 Free PMC article.
-
Halogen-Dependent Diversity and Weak Interactions in the Heterometallic Ni/Cd Complex Solids: Structural and Theoretical Investigation.Molecules. 2023 Nov 18;28(22):7652. doi: 10.3390/molecules28227652. Molecules. 2023. PMID: 38005374 Free PMC article.
-
Refinement of X-ray and electron diffraction crystal structures using analytical Fourier transforms of Slater-type atomic wavefunctions in Olex2.J Appl Crystallogr. 2024 Feb 1;57(Pt 1):161-174. doi: 10.1107/S1600576723010981. eCollection 2024 Feb 1. J Appl Crystallogr. 2024. PMID: 38322726 Free PMC article.
-
A method to estimate statistical errors of properties derived from charge-density modelling.Acta Crystallogr A Found Adv. 2018 May 1;74(Pt 3):170-183. doi: 10.1107/S2053273318004308. Epub 2018 May 3. Acta Crystallogr A Found Adv. 2018. PMID: 29724964 Free PMC article.
-
Synthesis of 1,2,4-Oxadiazin-5(6H)-One Derivatives and Their Biological Investigation as Monoamine Oxidase Inhibitors.Molecules. 2024 Nov 25;29(23):5550. doi: 10.3390/molecules29235550. Molecules. 2024. PMID: 39683710 Free PMC article.
LinkOut - more resources
Full Text Sources