doi: 10.1093/bioinformatics/btq286.
Epub 2010 May 30.
CisGenome Browser: a flexible tool for genomic data visualization
Affiliations
- PMID: 20513664
- PMCID: PMC2894522
- DOI: 10.1093/bioinformatics/btq286
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CisGenome Browser: a flexible tool for genomic data visualization
Bioinformatics.
.
Abstract
Summary: We present an open source, platform independent tool, called CisGenome Browser, which can work together with any other data analysis program to serve as a flexible component for genomic data visualization. It can also work by itself as a standalone genome browser. By working as a light-weight web server, CisGenome Browser is a convenient tool for data sharing between labs. It has features that are specifically designed for ultra high-throughput sequencing data visualization.
Availability: http://biogibbs.stanford.edu/ approximately jiangh/browser/
Figures
CisGenome Browser works as a visualization component for a third-party program. The six steps are numbered according to their temporal order in runtime.
Paired-end RNA-seq reads mapped to mouse gene Stk10 are visualized in CisGenome Browser. The gene structure is folded so that all the intronic regions are compressed.
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