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. 2010 Jul 15;26(14):1781-2.
doi: 10.1093/bioinformatics/btq286. Epub 2010 May 30.

CisGenome Browser: a flexible tool for genomic data visualization

Hui Jiang  1 , Fan Wang, Nigel P Dyer, Wing Hung Wong
Affiliations

CisGenome Browser: a flexible tool for genomic data visualization

Hui Jiang et al. Bioinformatics. .

Abstract

Summary: We present an open source, platform independent tool, called CisGenome Browser, which can work together with any other data analysis program to serve as a flexible component for genomic data visualization. It can also work by itself as a standalone genome browser. By working as a light-weight web server, CisGenome Browser is a convenient tool for data sharing between labs. It has features that are specifically designed for ultra high-throughput sequencing data visualization.

Availability: http://biogibbs.stanford.edu/ approximately jiangh/browser/

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Figures

Fig. 1.
Fig. 1.
CisGenome Browser works as a visualization component for a third-party program. The six steps are numbered according to their temporal order in runtime.
Fig. 2.
Fig. 2.
Paired-end RNA-seq reads mapped to mouse gene Stk10 are visualized in CisGenome Browser. The gene structure is folded so that all the intronic regions are compressed.
See this image and copyright information in PMC

References

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