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. 2010 Sep 15;26(18):2347-8.
doi: 10.1093/bioinformatics/btq430. Epub 2010 Jul 23.

Cytoscape Web: an interactive web-based network browser

Affiliations

Cytoscape Web: an interactive web-based network browser

Christian T Lopes et al. Bioinformatics. .

Abstract

Cytoscape Web is a web-based network visualization tool-modeled after Cytoscape-which is open source, interactive, customizable and easily integrated into web sites. Multiple file exchange formats can be used to load data into Cytoscape Web, including GraphML, XGMML and SIF.

Availability and implementation: Cytoscape Web is implemented in Flex/ActionScript with a JavaScript API and is freely available at http://cytoscapeweb.cytoscape.org/.

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Figures

Fig. 1.
Fig. 1.
A Cytoscape Web network with a customized visual style.

References

    1. Hooper SD, Bork P. Medusa: a simple tool for interaction graph analysis. Bioinformatics. 2005;21:4432–4433. - PubMed
    1. Jensen LJ, et al. STRING 8–a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res. 2009;37:D412–D416. - PMC - PubMed
    1. Klammer M, et al. jSquid: a Java applet for graphical on-line network exploration. Bioinformatics. 2008;24:1467–1468. - PubMed
    1. Razick S, et al. iRefIndex: a consolidated protein interactions database with provenance. BMC Bioinformatics. 2008;9:405. - PMC - PubMed
    1. Shannon P, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003;13:2498–2504. - PMC - PubMed

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