Regularization Paths for Generalized Linear Models via Coordinate Descent
- PMID: 20808728
- PMCID: PMC2929880
Regularization Paths for Generalized Linear Models via Coordinate Descent
Abstract
We develop fast algorithms for estimation of generalized linear models with convex penalties. The models include linear regression, two-class logistic regression, and multinomial regression problems while the penalties include ℓ(1) (the lasso), ℓ(2) (ridge regression) and mixtures of the two (the elastic net). The algorithms use cyclical coordinate descent, computed along a regularization path. The methods can handle large problems and can also deal efficiently with sparse features. In comparative timings we find that the new algorithms are considerably faster than competing methods.
Figures
Similar articles
-
Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent.J Stat Softw. 2011 Mar;39(5):1-13. doi: 10.18637/jss.v039.i05. J Stat Softw. 2011. PMID: 27065756 Free PMC article.
-
Elastic Net Regularization Paths for All Generalized Linear Models.J Stat Softw. 2023;106:1. doi: 10.18637/jss.v106.i01. Epub 2023 Mar 23. J Stat Softw. 2023. PMID: 37138589 Free PMC article.
-
Sparse conditional logistic regression for analyzing large-scale matched data from epidemiological studies: a simple algorithm.BMC Bioinformatics. 2015;16 Suppl 6(Suppl 6):S1. doi: 10.1186/1471-2105-16-S6-S1. Epub 2015 Apr 17. BMC Bioinformatics. 2015. PMID: 25916593 Free PMC article.
-
Sparse Logistic Regression With L 1/2 Penalty for Emotion Recognition in Electroencephalography Classification.Front Neuroinform. 2020 Aug 7;14:29. doi: 10.3389/fninf.2020.00029. eCollection 2020. Front Neuroinform. 2020. PMID: 32848688 Free PMC article.
-
Structured sparsity regularization for analyzing high-dimensional omics data.Brief Bioinform. 2021 Jan 18;22(1):77-87. doi: 10.1093/bib/bbaa122. Brief Bioinform. 2021. PMID: 32597465 Review.
Cited by
-
Prognostic modeling of hepatocellular carcinoma based on T-cell proliferation regulators: a bioinformatics approach.Front Immunol. 2024 Oct 9;15:1444091. doi: 10.3389/fimmu.2024.1444091. eCollection 2024. Front Immunol. 2024. PMID: 39445019 Free PMC article.
-
Identification of two methylated fragments of an SDC2 CpG island using a sliding window technique for early detection of colorectal cancer.FEBS Open Bio. 2021 Jul;11(7):1941-1952. doi: 10.1002/2211-5463.13180. Epub 2021 Jun 7. FEBS Open Bio. 2021. PMID: 33955718 Free PMC article.
-
Identification of microbial interaction network: zero-inflated latent Ising model based approach.BioData Min. 2020 Oct 7;13:16. doi: 10.1186/s13040-020-00226-7. eCollection 2020. BioData Min. 2020. PMID: 33042226 Free PMC article.
-
Fast inference in generalized linear models via expected log-likelihoods.J Comput Neurosci. 2014 Apr;36(2):215-34. doi: 10.1007/s10827-013-0466-4. Epub 2013 Jul 6. J Comput Neurosci. 2014. PMID: 23832289 Free PMC article.
-
Proposed virulence-associated genes of Streptococcus suis isolates from the United States serve as predictors of pathogenicity.Porcine Health Manag. 2021 Feb 28;7(1):22. doi: 10.1186/s40813-021-00201-6. Porcine Health Manag. 2021. PMID: 33648592 Free PMC article.
References
-
- Candes E, Tao T. The Dantzig selector: statistical estimation when p is much larger than n. Annals of Statistics. 2007;35(6):2313–2351.
-
- Chen SS, Donoho D, Saunders M. Atomic decomposition by basis pursuit. SIAM Journal on Scientific Computing. 1998;20(1):33–61.
-
- Daubechies I, Defrise M, De Mol C. An iterative thresholding algorithm for linear inverse problems with a sparsity constraint. Communications on Pure and Applied Mathematics. 2004;57:1413–1457.
-
- Dettling M. Bagboosting for tumor classification with gene expression data. Bioinformatics. 2004:3583–3593. - PubMed
-
- Donoho DL, Johnstone IM. Ideal spatial adaptation by wavelet shrinkage. Biometrika. 1994;81:425–455.
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources
Medical