The peculiar spectral properties of amino-substituted uracils: a combined theoretical and experimental study
- PMID: 20831146
- DOI: 10.1021/jp105267q
The peculiar spectral properties of amino-substituted uracils: a combined theoretical and experimental study
Abstract
A detailed experimental and computational study of the absorption and fluorescence spectra of 5-aminouracil (5 AU) and 6-aminouracil (6 AU) in aqueous solution is reported. The lowest energy band of the steady-state absorption spectra of 5 AU is considerably red-shifted, noticeably less intense, and broader than its counterpart in uracil (U). On the contrary, the 6 AU lowest energy absorption peak is close in energy to that of U, but it is much narrower and the transition is much more intense. The emission properties of 5 AU, 6 AU, and U are also very different. Both amino-substituted compounds exhibit indeed a much larger Stokes shift as compared to U, and the emission band of 5 AU is much narrower than that of 6 AU. Those features are fully rationalized with the help of PCM/TD-PBE0 calculations in aqueous solution and MS-CASPT2/CASSCF calculations in the gas phase. A stable minimum on the potential energy surface of the lowest energy bright state is found for 5 AU, both in the gas phase and in aqueous solution. For 6 AU a barrierless path leads to the conical intersection with the ground electronic state, but a nonplanar plateau region is predicted in aqueous solution, which is responsible for the very large Stokes shift. Some general considerations on the excited-state dynamics of uracil derivatives are also reported.
Similar articles
-
Singlet excited-state behavior of uracil and thymine in aqueous solution: a combined experimental and computational study of 11 uracil derivatives.J Am Chem Soc. 2006 Jan 18;128(2):607-19. doi: 10.1021/ja056181s. J Am Chem Soc. 2006. PMID: 16402849
-
The decay from the dark npi* excited state in uracil: an integrated CASPT2/CASSCF and PCM/TD-DFT study in the gas phase and in water.J Phys Chem B. 2008 Sep 4;112(35):10769-72. doi: 10.1021/jp804785p. Epub 2008 Aug 14. J Phys Chem B. 2008. PMID: 18700794
-
Absorption and fluorescence spectra of uracil in the gas phase and in aqueous solution: a TD-DFT quantum mechanical study.J Am Chem Soc. 2004 Nov 10;126(44):14320-1. doi: 10.1021/ja0460561. J Am Chem Soc. 2004. PMID: 15521728
-
Solvent effect on the singlet excited-state lifetimes of nucleic acid bases: A computational study of 5-fluorouracil and uracil in acetonitrile and water.J Am Chem Soc. 2006 Dec 20;128(50):16312-22. doi: 10.1021/ja0657861. J Am Chem Soc. 2006. PMID: 17165786
-
A computational study of the ground and excited state structure and absorption spectra of free-base N-confused porphine and free-base N-confused tetraphenylporphyrin.J Phys Chem A. 2008 Jul 24;112(29):6533-49. doi: 10.1021/jp802094r. Epub 2008 Jul 1. J Phys Chem A. 2008. PMID: 18593108
Cited by
-
Synthesis, reactivity, and biological activity of 5-aminouracil and its derivatives.Mol Divers. 2016 Feb;20(1):153-83. doi: 10.1007/s11030-015-9595-1. Epub 2015 Apr 30. Mol Divers. 2016. PMID: 25926388 Review.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources