An aminotransferase branch point connects purine catabolism to amino acid recycling
- PMID: 20852637
- DOI: 10.1038/nchembio.445
An aminotransferase branch point connects purine catabolism to amino acid recycling
Abstract
Although amino acids are known precursors of purines, a pathway for the direct recycling of amino acids from purines has never been described at the molecular level. We provide NMR and crystallographic evidence that the PucG protein from Bacillus subtilis catalyzes the transamination between an unstable intermediate ((S)-ureidoglycine) and the end product of purine catabolism (glyoxylate) to yield oxalurate and glycine. This activity enables soil and gut bacteria to use the animal purine waste as a source of carbon and nitrogen. The reaction catalyzed by (S)-ureidoglycine-glyoxylate aminotransferase (UGXT) illustrates a transamination sequence in which the same substrate provides both the amino group donor and, via its spontaneous decay, the amino group acceptor. Structural comparison and mutational analysis suggest a molecular rationale for the functional divergence between UGXT and peroxisomal alanine-glyoxylate aminotransferase, a fundamental enzyme for glyoxylate detoxification in humans.
Similar articles
-
Caenorhabditis elegans AGXT-1 is a mitochondrial and temperature-adapted ortholog of peroxisomal human AGT1: New insights into between-species divergence in glyoxylate metabolism.Biochim Biophys Acta. 2016 Sep;1864(9):1195-1205. doi: 10.1016/j.bbapap.2016.05.004. Epub 2016 May 11. Biochim Biophys Acta. 2016. PMID: 27179589
-
Gene context analysis reveals functional divergence between hypothetically equivalent enzymes of the purine-ureide pathway.Biochemistry. 2014 Feb 4;53(4):735-45. doi: 10.1021/bi4010107. Epub 2014 Jan 23. Biochemistry. 2014. PMID: 24417435
-
Distinct photorespiratory reactions are preferentially catalyzed by glutamate:glyoxylate and serine:glyoxylate aminotransferases in rice.J Photochem Photobiol B. 2015 Jan;142:110-7. doi: 10.1016/j.jphotobiol.2014.11.009. Epub 2014 Dec 12. J Photochem Photobiol B. 2015. PMID: 25528301
-
Protein homeostasis defects of alanine-glyoxylate aminotransferase: new therapeutic strategies in primary hyperoxaluria type I.Biomed Res Int. 2013;2013:687658. doi: 10.1155/2013/687658. Epub 2013 Jul 16. Biomed Res Int. 2013. PMID: 23956997 Free PMC article. Review.
-
Stereospecificity for the hydrogen transfer and molecular evolution of pyridoxal enzymes.Biosci Biotechnol Biochem. 1996 Feb;60(2):181-7. doi: 10.1271/bbb.60.181. Biosci Biotechnol Biochem. 1996. PMID: 9063963 Review.
Cited by
-
Biochemical and structural characterization of Klebsiella pneumoniae oxamate amidohydrolase in the uric acid degradation pathway.Acta Crystallogr D Struct Biol. 2016 Jun;72(Pt 6):808-16. doi: 10.1107/S2059798316007099. Epub 2016 May 25. Acta Crystallogr D Struct Biol. 2016. PMID: 27303801 Free PMC article.
-
In silico-guided metabolic engineering of Bacillus subtilis for efficient biosynthesis of purine nucleosides by blocking the key backflow nodes.Biotechnol Biofuels Bioprod. 2022 Aug 11;15(1):82. doi: 10.1186/s13068-022-02179-x. Biotechnol Biofuels Bioprod. 2022. PMID: 35953809 Free PMC article.
-
A Survey of Pyridoxal 5'-Phosphate-Dependent Proteins in the Gram-Positive Model Bacterium Bacillus subtilis.Front Mol Biosci. 2019 May 10;6:32. doi: 10.3389/fmolb.2019.00032. eCollection 2019. Front Mol Biosci. 2019. PMID: 31134210 Free PMC article. Review.
-
Crystal structure of a novel heterooligomeric aminotransferase from Serratia sp. ATCC 39006 provides insights into function.FEBS Lett. 2025 Jan;599(1):74-88. doi: 10.1002/1873-3468.15068. Epub 2024 Dec 1. FEBS Lett. 2025. PMID: 39618122 Free PMC article.
-
Alternative conformation induced by substrate binding for Arabidopsis thalianaN6-methyl-AMP deaminase.Nucleic Acids Res. 2019 Apr 8;47(6):3233-3243. doi: 10.1093/nar/gkz070. Nucleic Acids Res. 2019. PMID: 30721978 Free PMC article.
References
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Molecular Biology Databases