Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
Editorial

Towards BioDBcore: a community-defined information specification for biological databases

Pascale Gaudet et al. Nucleic Acids Res. 2011 Jan.

Abstract

The present article proposes the adoption of a community-defined, uniform, generic description of the core attributes of biological databases, BioDBCore. The goals of these attributes are to provide a general overview of the database landscape, to encourage consistency and interoperability between resources and to promote the use of semantic and syntactic standards. BioDBCore will make it easier for users to evaluate the scope and relevance of available resources. This new resource will increase the collective impact of the information present in biological databases.

PubMed Disclaimer

Figures

Figure 1.
Figure 1.
A screenshot of the BioDBCore discussion page on the ISB web site (http://biocurator.org/biodbcore.shtml).

References

    1. Cochrane GR, Galperin MY. The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources. Nucleic Acids Res. 2010;38:D1–D4. - PMC - PubMed
    1. Landsman D, Gentleman R, Kelso J, Ouellette BFF. DATABASE: a new forum for biological databases and curation. DATABASE. 2009 doi:10.1093/bap002 (Advance acess published online, 26 March 2009) - PMC - PubMed
    1. Attwood TK, Kell DB, McDermott P, Marsh J, Pettifer SR, Thorne D. Calling International Rescue: knowledge lost in literature and data landslide! Biochem. J. 2009;424:317–333. - PMC - PubMed
    1. Seringhaus MR, Gerstein MB. Publishing perishing? Towards tomorrow's information architecture. BMC Bioinform. 2007;8:17. - PMC - PubMed
    1. Philippi S, Kohler J. Addressing the problems with life-science databases for traditional uses and systems biology. Nat. Rev. Genet. 2006;7:482–488. - PubMed

Publication types

MeSH terms