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. 2009 Jan 1:3:26-30.
doi: 10.2174/1875036200903010026.

GOAPhAR: An Integrative Discovery Tool for Annotation, Pathway Analysis

Sachin Mathur  1 , Mahesh Visvanathan, Stan Svojanovsky, Byunggil Yoo, Adagarla B Srinivas, Gerald H Lushington, Peter G Smith
Affiliations

GOAPhAR: An Integrative Discovery Tool for Annotation, Pathway Analysis

Sachin Mathur et al. Open Bioinforma J. .

Abstract

We have developed the web based tool GOAPhAR (Gene Ontology, Annotations and Pathways for Array Research), that integrates information from disparate sources regarding gene annotations, protein annotations, identifiers associated with probe sets, functional pathways, protein interactions, Gene Ontology, publicly available microarray datasets and tools for statistically validating clusters in microarray data. Genes of interest can be input as Affymetrix probe identifiers, Genbank, or Unigene identifiers for human, mouse or rat genomes. Results are provided in a user friendly interface with hyperlinks to the sources of information.

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Figures

Fig. (1)
Fig. (1)
Schematic diagram depicting the work flow in the GOAPhAR
Fig. (2)
Fig. (2)
Simple use age of the GOAPhAR server wherein the user provides the system with a list of probe set id's and retrieve various annotations related to it.
See this image and copyright information in PMC

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