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. 2011 Mar 15;27(6):889-90.
doi: 10.1093/bioinformatics/btr020. Epub 2011 Jan 19.

Dalliance: interactive genome viewing on the web

Thomas A Down  1 , Matias Piipari, Tim J P Hubbard
Affiliations

Dalliance: interactive genome viewing on the web

Thomas A Down et al. Bioinformatics. .

Abstract

Summary: Dalliance is a new genome viewer which offers a high level of interactivity while running within a web browser. All data is fetched using the established distributed annotation system (DAS) protocol, making it easy to customize the browser and add extra data.

Availability and implementation: Dalliance runs entirely within your web browser, and relies on existing DAS server infrastructure. Browsers for several mammalian genomes are available at http://www.biodalliance.org/, and the use of DAS means you can add your own data to these browsers. In addition, the source code (Javascript) is available under the BSD license, and is straightforward to install on your own web server and embed within other documents.

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Figures

Fig. 1.
Fig. 1.
Typical display from the Dalliance genome browser. Quantitative data from functional genomics experiments can be displayed in a range of styles, configured using DAS stylesheets.
See this image and copyright information in PMC

References

    1. Hubbard TJ, et al. Ensembl 2009. Nucleic Acids Res. 2009;37:D690–D697. - PMC - PubMed
    1. Jenkinson AM, et al. Integrating biological data–the distributed annotation system. BMC Bioinformatics. 2008;9(Suppl. 8):S3. - PMC - PubMed
    1. Kent WJ, et al. Bigwig and bigbed: enabling browsing of large distributed datasets. Bioinformatics. 2010;26:2204–2207. - PMC - PubMed
    1. Lewis SE, et al. Apollo: a sequence annotation editor. Genome Biol. 2002;3 research0082. - PMC - PubMed
    1. Li H, et al. The sequence alignment/map format and SAMtools. Bioinformatics. 2009;25:2078–2079. - PMC - PubMed

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