Construction of small RNA cDNA libraries for high-throughput sequencing
- PMID: 21365488
- DOI: 10.1007/978-1-61779-065-2_9
Construction of small RNA cDNA libraries for high-throughput sequencing
Abstract
Small RNAs (smRNAs) play an essential role in virtually every aspect of growth and development, by regulating gene expression at the post-transcriptional and/or transcriptional level. New high-throughput sequencing technology allows for a comprehensive coverage of smRNAs in any given biological sample, and has been widely used for profiling smRNA populations in various developmental stages, tissue and cell types, or normal and disease states. In this article, we describe the method used in our laboratory to construct smRNA cDNA libraries for high-throughput sequencing.
Similar articles
-
Construction of small RNA cDNA libraries for deep sequencing.Methods. 2007 Oct;43(2):110-7. doi: 10.1016/j.ymeth.2007.05.002. Methods. 2007. PMID: 17889797
-
Generation of plant small RNA cDNA libraries for high-throughput sequencing.Methods Mol Biol. 2012;894:123-37. doi: 10.1007/978-1-61779-882-5_9. Methods Mol Biol. 2012. PMID: 22678577
-
Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology.J Integr Plant Biol. 2012 Feb;54(2):73-86. doi: 10.1111/j.1744-7909.2012.01098.x. J Integr Plant Biol. 2012. PMID: 22221297
-
Post-transcriptional small RNA pathways in plants: mechanisms and regulations.Genes Dev. 2006 Apr 1;20(7):759-71. doi: 10.1101/gad.1410506. Genes Dev. 2006. PMID: 16600909 Review.
-
Deep sequencing of small RNAs in plants: applied bioinformatics.Brief Funct Genomics. 2012 Jan;11(1):71-85. doi: 10.1093/bfgp/elr039. Epub 2011 Dec 19. Brief Funct Genomics. 2012. PMID: 22184332 Review.
Cited by
-
Identification of microRNAs and their targets in tomato infected with Cucumber mosaic virus based on deep sequencing.Planta. 2014 Dec;240(6):1335-52. doi: 10.1007/s00425-014-2158-3. Epub 2014 Sep 10. Planta. 2014. PMID: 25204630
-
Deep sequencing of small RNA repertoires in mice reveals metabolic disorders-associated hepatic miRNAs.PLoS One. 2013 Nov 15;8(11):e80774. doi: 10.1371/journal.pone.0080774. eCollection 2013. PLoS One. 2013. PMID: 24260478 Free PMC article.
-
Identification and Analysis of the Porcine MicroRNA in Porcine Cytomegalovirus-Infected Macrophages Using Deep Sequencing.PLoS One. 2016 Mar 4;11(3):e0150971. doi: 10.1371/journal.pone.0150971. eCollection 2016. PLoS One. 2016. PMID: 26943793 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources