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. 2011 Jul;193(13):3399-400.
doi: 10.1128/JB.05109-11. Epub 2011 May 6.

Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614

Nicholas V Coleman  1 , Neil L Wilson, Kerrie Barry, Thomas S Brettin, David C Bruce, Alex Copeland, Eileen Dalin, John C Detter, Tijana Glavina Del Rio, Lynne A Goodwin, Nancy M Hammon, Shunsheng Han, Loren J Hauser, Sanjay Israni, Edwin Kim, Nikolaos Kyrpides, Miriam L Land, Alla Lapidus, Frank W Larimer, Susan Lucas, Sam Pitluck, Paul Richardson, Jeremy Schmutz, Roxanne Tapia, Sue Thompson, Hope N Tice, Jim C Spain, James G Gossett, Timothy E Mattes
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Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614

Nicholas V Coleman et al. J Bacteriol. 2011 Jul.

Abstract

Nocardioides sp. strain JS614 grows on ethene and vinyl chloride (VC) as sole carbon and energy sources and is of interest for bioremediation and biocatalysis. Sequencing of the complete genome of JS614 provides insight into the genetic basis of alkene oxidation, supports ongoing research into the physiology and biochemistry of growth on ethene and VC, and provides biomarkers to facilitate detection of VC/ethene oxidizers in the environment. This is the first genome sequence from the genus Nocardioides and the first genome of a VC/ethene-oxidizing bacterium.

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References

    1. Aparicio S., et al. 2002. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297:1301–1310 - PubMed
    1. Badger J. H., Olsen G. J. 1999. CRITICA: coding region identification tool invoking comparative analysis. Mol. Biol. Evol. 16:512–524 - PubMed
    1. Bendtsen J. D., Nielsen H., von Heijne G., Brunak S. 2004. Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340:783–795 - PubMed
    1. Chuang A. S., Mattes T. E. 2007. Identification of polypeptides expressed in response to vinyl chloride, ethene, and epoxyethane in Nocardioides sp. strain JS614 by using peptide mass fingerprinting. Appl. Environ. Microbiol. 73:4368–4372 - PMC - PubMed
    1. Coleman N. V., Mattes T. E., Gossett J. M., Spain J. C. 2002. Phylogenetic and kinetic diversity of aerobic vinyl chloride-assimilating bacteria from contaminated sites. Appl. Environ. Microbiol. 68:6162–6171 - PMC - PubMed

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