Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2011 Oct 19:2011:bar031.
doi: 10.1093/database/bar031. Print 2011.

The Reactome BioMart

Robin A Haw  1 , David Croft, Christina K Yung, Nelson Ndegwa, Peter D'Eustachio, Henning Hermjakob, Lincoln D Stein
Affiliations

The Reactome BioMart

Robin A Haw et al. Database (Oxford). .

Abstract

Reactome is an open source, expert-authored, manually curated and peer-reviewed database of reactions, pathways and biological processes. We provide an intuitive web-based user interface to pathway knowledge and a suite of data analysis tools. The Reactome BioMart provides biologists and bioinformaticians with a single web interface for performing simple or elaborate queries of the Reactome database, aggregating data from different sources and providing an opportunity to integrate experimental and computational results with information relating to biological pathways. Database URL: http://www.reactome.org.

PubMed Disclaimer

Figures

Figure 1.
Figure 1.
Reactome BioMart Canned Query. (A) The canned query selector allows the user to choose from one of the currently available queries. (B) The results table for the canned query.
Figure 2.
Figure 2.
Reactome BioMart Regular Query. (A) The ‘database’ selector selects the REACTOME database. (B) The ‘dataset’ drop-down menu. (C) The ‘filters’ page that allows the user to narrow down the query to the UniProt identifiers provided and human annotations. (D) The reaction ‘attributes’ that determines the columns to be displayed in the results table.
Figure 3.
Figure 3.
Combined Reactome-IKMC Query results from the BioMart Central Portal. The Reactome and IKMC dataset ‘filters’ and ‘attributes’ are visible on the left of the results table.
See this image and copyright information in PMC

Similar articles

See all similar articles

Cited by

See all "Cited by" articles

References

    1. Croft D, O'Kelly G, Wu G, et al. Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res. 2011;39:D691–D697. - PMC - PubMed
    1. Matthews L, Gopinath G, Gillespie M, et al. Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res. 2009;37:D619–D6122. - PMC - PubMed
    1. Vastrik I, D'Eustachio P, Schmidt E, et al. Reactome: a knowledge base of biologic pathways and processes. Genome Biol. 2007;8:R39. - PMC - PubMed
    1. Joshi-Tope G, Gillespie M, Vastrik I, et al. Reactome: a knowledgebase of biological pathways. Nucleic Acids Res. 2005;33:D428–D532. - PMC - PubMed
    1. Maglott D, Ostell J, Pruitt KD, Tatusova T. Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res. 2011;39:D52–D57. - PMC - PubMed

Publication types