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. 2012 Jan 15;28(2):284-5.
doi: 10.1093/bioinformatics/btr613. Epub 2011 Nov 8.

NARWHAL, a primary analysis pipeline for NGS data

R W W Brouwer  1 , M C G N van den Hout, F G Grosveld, W F J van Ijcken
Affiliations

NARWHAL, a primary analysis pipeline for NGS data

R W W Brouwer et al. Bioinformatics. .

Abstract

The NARWHAL software pipeline has been developed to automate the primary analysis of Illumina sequencing data. This pipeline combines a new and flexible de-multiplexing tool with open-source aligners and automated quality assessment. The entire pipeline can be run using only one simple sample-sheet for diverse sequencing applications. NARWHAL creates a sample-oriented data structure and outperforms existing tools in speed.

Availability: https://trac.nbic.nl/narwhal/.

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