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. 2012 Feb 15;28(4):595-6.
doi: 10.1093/bioinformatics/btr691. Epub 2011 Dec 15.

PopDrowser: the Population Drosophila Browser

Miquel Ràmia  1 , Pablo Librado, Sònia Casillas, Julio Rozas, Antonio Barbadilla
Affiliations

PopDrowser: the Population Drosophila Browser

Miquel Ràmia et al. Bioinformatics. .

Abstract

Motivation: The completion of 168 genome sequences from a single population of Drosophila melanogaster provides a global view of genomic variation and an understanding of the evolutionary forces shaping the patterns of DNA polymorphism and divergence along the genome.

Results: We present the 'Population Drosophila Browser' (PopDrowser), a new genome browser specially designed for the automatic analysis and representation of genetic variation across the D. melanogaster genome sequence. PopDrowser allows estimating and visualizing the values of a number of DNA polymorphism and divergence summary statistics, linkage disequilibrium parameters and several neutrality tests. PopDrowser also allows performing custom analyses on-the-fly using user-selected parameters.

Availability: PopDrowser is freely available from http://PopDrowser.uab.cat.

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