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. 2012 Feb 15;28(4):589-90.
doi: 10.1093/bioinformatics/btr700. Epub 2011 Dec 22.

htSeqTools: high-throughput sequencing quality control, processing and visualization in R

Evarist Planet  1 , Camille Stephan-Otto Attolini, Oscar Reina, Oscar Flores, David Rossell
Affiliations

htSeqTools: high-throughput sequencing quality control, processing and visualization in R

Evarist Planet et al. Bioinformatics. .

Abstract

We provide a Bioconductor package with quality assessment, processing and visualization tools for high-throughput sequencing data, with emphasis in ChIP-seq and RNA-seq studies. It includes detection of outliers and biases, inefficient immuno-precipitation and overamplification artifacts, de novo identification of read-rich genomic regions and visualization of the location and coverage of genomic region lists.

Availability: www.bioconductor.org.

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