Structure-based virtual screening for drug discovery: a problem-centric review
- PMID: 22281989
- PMCID: PMC3282008
- DOI: 10.1208/s12248-012-9322-0
Structure-based virtual screening for drug discovery: a problem-centric review
Abstract
Structure-based virtual screening (SBVS) has been widely applied in early-stage drug discovery. From a problem-centric perspective, we reviewed the recent advances and applications in SBVS with a special focus on docking-based virtual screening. We emphasized the researchers' practical efforts in real projects by understanding the ligand-target binding interactions as a premise. We also highlighted the recent progress in developing target-biased scoring functions by optimizing current generic scoring functions toward certain target classes, as well as in developing novel ones by means of machine learning techniques.
Figures
Similar articles
-
Data-augmented machine learning scoring functions for virtual screening of YTHDF1 m6A reader protein.Comput Biol Med. 2024 Dec;183:109268. doi: 10.1016/j.compbiomed.2024.109268. Epub 2024 Oct 12. Comput Biol Med. 2024. PMID: 39405731
-
The role and potential of computer-aided drug discovery strategies in the discovery of novel antimicrobials.Comput Biol Med. 2024 Feb;169:107927. doi: 10.1016/j.compbiomed.2024.107927. Epub 2024 Jan 2. Comput Biol Med. 2024. PMID: 38184864 Review.
-
Computer-aided drug discovery research at a global contract research organization.J Comput Aided Mol Des. 2017 Mar;31(3):309-318. doi: 10.1007/s10822-016-9991-3. Epub 2016 Nov 1. J Comput Aided Mol Des. 2017. PMID: 27804014
-
Combining label-free cell phenotypic profiling with computational approaches for novel drug discovery.Expert Opin Drug Discov. 2015 Apr;10(4):331-43. doi: 10.1517/17460441.2015.1020788. Epub 2015 Mar 1. Expert Opin Drug Discov. 2015. PMID: 25727255 Review.
-
Use of machine learning approaches for novel drug discovery.Expert Opin Drug Discov. 2016;11(3):225-39. doi: 10.1517/17460441.2016.1146250. Expert Opin Drug Discov. 2016. PMID: 26814169 Review.
Cited by
-
Applying DEKOIS 2.0 in structure-based virtual screening to probe the impact of preparation procedures and score normalization.J Cheminform. 2015 May 20;7:21. doi: 10.1186/s13321-015-0074-6. eCollection 2015. J Cheminform. 2015. PMID: 26034510 Free PMC article.
-
GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing.PLoS One. 2016 Jul 15;11(7):e0158898. doi: 10.1371/journal.pone.0158898. eCollection 2016. PLoS One. 2016. PMID: 27420300 Free PMC article.
-
Network Pharmacology- and Molecular Docking-Based Identification of Potential Phytocompounds from Argyreia capitiformis in the Treatment of Inflammation.Evid Based Complement Alternat Med. 2022 Jan 31;2022:8037488. doi: 10.1155/2022/8037488. eCollection 2022. Evid Based Complement Alternat Med. 2022. PMID: 35140801 Free PMC article.
-
Unsupervised Representation Learning for Proteochemometric Modeling.Int J Mol Sci. 2021 Nov 28;22(23):12882. doi: 10.3390/ijms222312882. Int J Mol Sci. 2021. PMID: 34884688 Free PMC article.
-
In-silico Evaluation of Rare Codons and their Positions in the Structure of ATP8b1 Gene.J Biomed Phys Eng. 2019 Feb 1;9(1):105-120. eCollection 2019 Feb. J Biomed Phys Eng. 2019. PMID: 30881940 Free PMC article.
References
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources