Recent advances of metabolomics in plant biotechnology
- PMID: 22308170
- PMCID: PMC3262138
- DOI: 10.1007/s11816-011-0191-2
Recent advances of metabolomics in plant biotechnology
Abstract
Biotechnology, including genetic modification, is a very important approach to regulate the production of particular metabolites in plants to improve their adaptation to environmental stress, to improve food quality, and to increase crop yield. Unfortunately, these approaches do not necessarily lead to the expected results due to the highly complex mechanisms underlying metabolic regulation in plants. In this context, metabolomics plays a key role in plant molecular biotechnology, where plant cells are modified by the expression of engineered genes, because we can obtain information on the metabolic status of cells via a snapshot of their metabolome. Although metabolome analysis could be used to evaluate the effect of foreign genes and understand the metabolic state of cells, there is no single analytical method for metabolomics because of the wide range of chemicals synthesized in plants. Here, we describe the basic analytical advancements in plant metabolomics and bioinformatics and the application of metabolomics to the biological study of plants.
References
-
- Akiyama K, Chikayama E, Yuasa H, Shimada Y, Tohge T, Shinozaki K, Hirai MY, Sakurai T, Kikuchi J, Saito K. PRIMe: a Web site that assembles tools for metabolomics and transcriptomics. In Silico Biol. 2008;8:339–345. - PubMed
-
- Albinsky D, Kusano M, Higuchi M, Hayashi N, Kobayashi M, Fukushima A, Mori M, Ichikawa T, Matsui K, Kuroda H, Horii Y, Tsumoto Y, Sakakibara H, Hirochika H, Matsui M, Saito K. Metabolomic screening applied to rice FOX Arabidopsis lines leads to the identification of a gene-changing nitrogen metabolism. Mol Plant. 2010;3:125–142. doi: 10.1093/mp/ssp069. - DOI - PubMed
-
- Albinsky D, Sawada Y, Kuwahara A, Nagano M, Hirai A, Saito K, Hirai MY. Widely targeted metabolomics and coexpression analysis as tools to identify genes involved in the side-chain elongation steps of aliphatic glucosinolate biosynthesis. Amino Acids. 2010;39:1067–1075. doi: 10.1007/s00726-010-0681-5. - DOI - PubMed
-
- Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796–815. doi:10.1038/35048692 - PubMed
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