Hydrogen bond strength modulates the mechanical strength of ferric-thiolate bonds in rubredoxin
- PMID: 22309227
- DOI: 10.1021/ja2078812
Hydrogen bond strength modulates the mechanical strength of ferric-thiolate bonds in rubredoxin
Abstract
It has long been recognized that hydrogen bonds formed by protein backbone amides with cysteinyl S(γ) atoms play important roles in modulating the functional and structural properties of the iron-sulfur centers in proteins. Here we use single molecule atomic force microscopy, cyclic voltammetry, and protein engineering techniques to investigate directly how the strength of N-H···S(γ) hydrogen bonds in the secondary coordination sphere affects the mechanical stability of Fe(III)-thiolate bonds of rubredoxin. Our results show that the mechanical stability of Fe(III)-thiolate bonds in rubredoxin correlates with the strength of N-H···S(γ) hydrogen bonds as reflected by the midpoint reduction potential, providing direct evidence that N-H···S(γ) hydrogen bonds play important roles in modulating the mechanical and kinetic properties of the Fe(III)-thiolate bonds of iron-sulfur proteins and corroborating the important roles of the protein environment in tuning the properties of metal-thiolate bonds.
© 2012 American Chemical Society
Similar articles
-
Metal-thiolate bonds in bioinorganic chemistry.J Comput Chem. 2006 Sep;27(12):1415-28. doi: 10.1002/jcc.20451. J Comput Chem. 2006. PMID: 16807974 Review.
-
Highly covalent ferric-thiolate bonds exhibit surprisingly low mechanical stability.J Am Chem Soc. 2011 May 4;133(17):6791-8. doi: 10.1021/ja200715h. Epub 2011 Apr 8. J Am Chem Soc. 2011. PMID: 21476573
-
Direct measurements of the mechanical stability of zinc-thiolate bonds in rubredoxin by single-molecule atomic force microscopy.Biophys J. 2011 Sep 21;101(6):1467-73. doi: 10.1016/j.bpj.2011.08.021. Epub 2011 Sep 20. Biophys J. 2011. PMID: 21943428 Free PMC article.
-
Single molecule force spectroscopy reveals that iron is released from the active site of rubredoxin by a stochastic mechanism.J Am Chem Soc. 2013 May 29;135(21):7992-8000. doi: 10.1021/ja402150q. Epub 2013 May 14. J Am Chem Soc. 2013. PMID: 23627554
-
A new look at the role of thiolate ligation in cytochrome P450.J Biol Inorg Chem. 2017 Apr;22(2-3):209-220. doi: 10.1007/s00775-016-1430-3. Epub 2017 Jan 16. J Biol Inorg Chem. 2017. PMID: 28091754 Free PMC article. Review.
Cited by
-
Spectroscopic Studies of the EutT Adenosyltransferase from Salmonella enterica: Evidence of a Tetrahedrally Coordinated Divalent Transition Metal Cofactor with Cysteine Ligation.Biochemistry. 2017 Jan 17;56(2):364-375. doi: 10.1021/acs.biochem.6b00750. Epub 2017 Jan 3. Biochemistry. 2017. PMID: 28045498 Free PMC article.
-
Single-molecule dynamics and mechanisms of metalloregulators and metallochaperones.Biochemistry. 2013 Oct 15;52(41):7170-83. doi: 10.1021/bi400597v. Epub 2013 Oct 1. Biochemistry. 2013. PMID: 24053279 Free PMC article. Review.
-
Hydrogen-bonded complexes between dimethyl sulfoxide and monoprotic acids: molecular properties and IR spectroscopy.J Mol Model. 2014 Nov;20(11):2477. doi: 10.1007/s00894-014-2477-0. Epub 2014 Oct 25. J Mol Model. 2014. PMID: 25342154
-
The rupture mechanism of rubredoxin is more complex than previously thought.Chem Sci. 2020 May 27;11(23):6036-6044. doi: 10.1039/d0sc02164d. Chem Sci. 2020. PMID: 34094096 Free PMC article.
-
New insights into the oxidation process from neutron and X-ray crystal structures of an O2-sensitive [NiFe]-hydrogenase.Chem Sci. 2023 Aug 21;14(35):9306-9315. doi: 10.1039/d3sc02156d. eCollection 2023 Sep 13. Chem Sci. 2023. PMID: 37712026 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources