Emergent bistability: effects of additive and multiplicative noise
- PMID: 22354678
- DOI: 10.1140/epje/i2012-12011-4
Emergent bistability: effects of additive and multiplicative noise
Abstract
Positive feedback and cooperativity in the regulation of gene expression are generally considered to be necessary for obtaining bistable expression states. Recently, a novel mechanism of bistability termed emergent bistability has been proposed which involves only positive feedback and no cooperativity in the regulation. An additional positive feedback loop is effectively generated due to the inhibition of cellular growth by the synthesized proteins. The mechanism, demonstrated for a synthetic circuit, may be prevalent in natural systems also as some recent experimental results appear to suggest. In this paper, we study the effects of additive and multiplicative noise on the dynamics governing emergent bistability. The calculational scheme employed is based on the Langevin and Fokker-Planck formalisms. The steady state probability distributions of protein levels and the mean first passage times are computed for different noise strengths and system parameters. In the region of bistability, the bimodal probability distribution is shown to be a linear combination of a lognormal and a Gaussian distribution. The variances of the individual distributions and the relative weights of the distributions are further calculated for varying noise strengths and system parameters. The experimental relevance of the model results is also pointed out.
Similar articles
-
Threshold response and bistability in gene regulation by small noncoding RNA.Eur Phys J E Soft Matter. 2018 Jan 31;41(1):12. doi: 10.1140/epje/i2018-11617-8. Eur Phys J E Soft Matter. 2018. PMID: 29380073
-
Bistability, probability transition rate and first-passage time in an autoactivating positive-feedback loop.PLoS One. 2011 Mar 21;6(3):e17104. doi: 10.1371/journal.pone.0017104. PLoS One. 2011. PMID: 21445288 Free PMC article.
-
An open-loop approach to calculate noise-induced transitions.J Theor Biol. 2017 Feb 21;415:145-157. doi: 10.1016/j.jtbi.2016.12.012. Epub 2016 Dec 18. J Theor Biol. 2017. PMID: 27993627
-
Bistability versus bimodal distributions in gene regulatory processes from population balance.PLoS Comput Biol. 2011 Aug;7(8):e1002140. doi: 10.1371/journal.pcbi.1002140. Epub 2011 Aug 25. PLoS Comput Biol. 2011. PMID: 21901083 Free PMC article.
-
Cooperativity in cellular biochemical processes: noise-enhanced sensitivity, fluctuating enzyme, bistability with nonlinear feedback, and other mechanisms for sigmoidal responses.Annu Rev Biophys. 2012;41:179-204. doi: 10.1146/annurev-biophys-050511-102240. Epub 2012 Feb 23. Annu Rev Biophys. 2012. PMID: 22404682 Review.
Cited by
-
Effects of microRNA-mediated negative feedback on gene expression noise.Biophys J. 2023 Nov 7;122(21):4220-4240. doi: 10.1016/j.bpj.2023.09.019. Epub 2023 Oct 6. Biophys J. 2023. PMID: 37803829 Free PMC article.
-
A stochastic chemical dynamic approach to correlate autoimmunity and optimal vitamin-D range.PLoS One. 2014 Jun 27;9(6):e100635. doi: 10.1371/journal.pone.0100635. eCollection 2014. PLoS One. 2014. PMID: 24971516 Free PMC article.
-
Time-delay-induced dynamical behaviors for an ecological vegetation growth system driven by cross-correlated multiplicative and additive noises.Eur Phys J E Soft Matter. 2018 May 14;41(5):60. doi: 10.1140/epje/i2018-11668-9. Eur Phys J E Soft Matter. 2018. PMID: 29748867
-
Origins of binary gene expression in post-transcriptional regulation by microRNAs.Eur Phys J E Soft Matter. 2012 Oct;35(10):102. doi: 10.1140/epje/i2012-12102-2. Epub 2012 Oct 15. Eur Phys J E Soft Matter. 2012. PMID: 23064825
-
Threshold response and bistability in gene regulation by small noncoding RNA.Eur Phys J E Soft Matter. 2018 Jan 31;41(1):12. doi: 10.1140/epje/i2018-11617-8. Eur Phys J E Soft Matter. 2018. PMID: 29380073
References
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources