Hydrogen exchange mass spectrometry: are we out of the quicksand?
- PMID: 22476891
- PMCID: PMC3389995
- DOI: 10.1007/s13361-012-0377-z
Hydrogen exchange mass spectrometry: are we out of the quicksand?
Abstract
Although the use of hydrogen exchange (HX) mass spectrometry (MS) to study proteins and protein conformation is now over 20 years old, the perception lingers that it still has "issues." Is this method, in fact, still in the quicksand with many remaining obstacles to overcome? We do not think so. This critical insight addresses the "issues" and explores several broad questions including, have the limitations of HX MS been surmounted and has HX MS achieved "indispensable" status in the pantheon of protein structural analysis tools.
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References
-
- Katta V, Chait BT. Conformational changes in proteins probed by hydrogen-exchange electrospray-ionization mass spectrometry. Rapid Commun Mass Spectrom. 1991;5:214–217. - PubMed
-
- Anfinsen CB, Redfield RR, Choate WL, Page J, Carroll WR. Studies on the gross structure, cross-linkages, and terminal sequences in ribonuclease. J Biol Chem. 1954;207:201–210. - PubMed
-
- Anfinsen CB. Principles that govern the folding of protein chains. Science. 1973;181:223–230. - PubMed
-
- Miranker A, Robinson CV, Radford SE, Dobson CM. Investigation of protein folding by mass spectrometry. FASEB J. 1996;10:93–101. - PubMed
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