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. 2012 Jun 28;9(7):683-9.
doi: 10.1038/nmeth.2047.

BioImageXD: an open, general-purpose and high-throughput image-processing platform

Pasi Kankaanpää  1 , Lassi Paavolainen, Silja Tiitta, Mikko Karjalainen, Joacim Päivärinne, Jonna Nieminen, Varpu Marjomäki, Jyrki Heino, Daniel J White
Affiliations

BioImageXD: an open, general-purpose and high-throughput image-processing platform

Pasi Kankaanpää et al. Nat Methods. .

Abstract

BioImageXD puts open-source computer science tools for three-dimensional visualization and analysis into the hands of all researchers, through a user-friendly graphical interface tuned to the needs of biologists. BioImageXD has no restrictive licenses or undisclosed algorithms and enables publication of precise, reproducible and modifiable workflows. It allows simple construction of processing pipelines and should enable biologists to perform challenging analyses of complex processes. We demonstrate its performance in a study of integrin clustering in response to selected inhibitors.

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References

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