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. 2012 Sep 15;28(18):2402-3.
doi: 10.1093/bioinformatics/bts432. Epub 2012 Jul 5.

CySBML: a Cytoscape plugin for SBML

Matthias König  1 , Andreas Dräger, Hermann-Georg Holzhütter
Affiliations

CySBML: a Cytoscape plugin for SBML

Matthias König et al. Bioinformatics. .

Abstract

Summary: CySBML is a plugin designed to work with Systems Biology Markup Language (SBML) in Cytoscape having the following features: SBML import, support of the SBML layout and qualitative model packages, navigation in network layouts based on SBML structure, access to MIRIAM and SBO-based annotations and SBML validation. CySBML includes an importer for BioModels to load SBML from standard repositories.

Availability and implementation: Freely available for non-commercial purposes through the Cytoscape plugin manager or for download at http://sourceforge.net/projects/cysbml/.

Contact: cysbml-team@lists.sourceforge.net

Supplementary information: Tutorial, usage guide, installation instructions and additional figures are available for download at http://www.charite.de/sysbio/people/koenig/software/cysbml/.

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