doi: 10.1093/bioinformatics/bts480.
Epub 2012 Aug 20.
Snakemake--a scalable bioinformatics workflow engine
Affiliations
- PMID: 22908215
- DOI: 10.1093/bioinformatics/bts480
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Snakemake--a scalable bioinformatics workflow engine
Bioinformatics.
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Erratum in
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Snakemake-a scalable bioinformatics workflow engine.Bioinformatics. 2018 Oct 15;34(20):3600. doi: 10.1093/bioinformatics/bty350. Bioinformatics. 2018. PMID: 29788404 No abstract available.
Abstract
Summary: Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow. It is the first system to support the use of automatically inferred multiple named wildcards (or variables) in input and output filenames.
Availability: http://snakemake.googlecode.com.
Contact: johannes.koester@uni-due.de.
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