Cited by

• Performance of a limiting-antigen avidity enzyme immunoassay for cross-sectional estimation of HIV incidence in the United States.

  Konikoff J, Brookmeyer R, Longosz AF, Cousins MM, Celum C, Buchbinder SP, Seage GR 3rd, Kirk GD, Moore RD, Mehta SH, Margolick JB, Brown J, Mayer KH, Koblin BA, Justman JE, Hodder SL, Quinn TC, Eshleman SH, Laeyendecker O. Konikoff J, et al. PLoS One. 2013 Dec 27;8(12):e82772. doi: 10.1371/journal.pone.0082772. eCollection 2013. PLoS One. 2013. PMID: 24386116 Free PMC article.
• HIV-1 envelope sequence-based diversity measures for identifying recent infections.

  Kafando A, Fournier E, Serhir B, Martineau C, Doualla-Bell F, Sangaré MN, Sylla M, Chamberland A, El-Far M, Charest H, Tremblay CL. Kafando A, et al. PLoS One. 2017 Dec 28;12(12):e0189999. doi: 10.1371/journal.pone.0189999. eCollection 2017. PLoS One. 2017. PMID: 29284009 Free PMC article.
• HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data.

  Golubchik T, Abeler-Dörner L, Hall M, Wymant C, Bonsall D, Macintyre-Cockett G, Thomson L, Baeten JM, Celum CL, Galiwango RM, Kosloff B, Limbada M, Mujugira A, Mugo NR, Gall A, Blanquart F, Bakker M, Bezemer D, Ong SH, Albert J, Bannert N, Fellay J, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos RD, Meyer L, Porter K, van Sighem A, van der Valk M, Berkhout B, Kellam P, Cornelissen M, Reiss P, Ayles H, Burns DN, Fidler S, Grabowski MK, Hayes R, Herbeck JT, Kagaayi J, Kaleebu P, Lingappa JR, Ssemwanga D, Eshleman SH, Cohen MS, Ratmann O, Laeyendecker O, Fraser C; HPTN 071 (PopART) Phylogenetics protocol team, the BEEHIVE consortium and the PANGEA consortium. Golubchik T, et al. BMC Bioinformatics. 2025 Aug 14;26(1):212. doi: 10.1186/s12859-025-06189-y. BMC Bioinformatics. 2025. PMID: 40813968 Free PMC article.
• Assays for estimating HIV incidence: updated global market assessment and estimated economic value.

  Morrison CS, Homan R, Mack N, Seepolmuang P, Averill M, Taylor J, Osborn J, Dailey P, Parkin N, Ongarello S, Mastro TD. Morrison CS, et al. J Int AIDS Soc. 2017 Nov;20(3):e25018. doi: 10.1002/jia2.25018. J Int AIDS Soc. 2017. PMID: 29165892 Free PMC article.
• HIITE: HIV-1 incidence and infection time estimator.

  Park SY, Love TMT, Kapoor S, Lee HY. Park SY, et al. Bioinformatics. 2018 Jun 15;34(12):2046-2052. doi: 10.1093/bioinformatics/bty073. Bioinformatics. 2018. PMID: 29438560 Free PMC article.