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. 2013 Jan;41(Database issue):D36-42.
doi: 10.1093/nar/gks1195. Epub 2012 Nov 27.

GenBank

Dennis A Benson  1 , Mark Cavanaugh, Karen Clark, Ilene Karsch-Mizrachi, David J Lipman, James Ostell, Eric W Sayers
Affiliations

GenBank

Dennis A Benson et al. Nucleic Acids Res. 2013 Jan.

Abstract

GenBank® (http://www.ncbi.nlm.nih.gov) is a comprehensive database that contains publicly available nucleotide sequences for almost 260 000 formally described species. These sequences are obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole-genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and GenBank staff assigns accession numbers upon data receipt. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI home page: www.ncbi.nlm.nih.gov.

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References

    1. Benson DA, Karsch-Mizrachi I, Clark K, Lipman DJ, Ostell J, Sayers EW. GenBank. Nucleic Acids Res. 2012;40:D48–D53. - PMC - PubMed
    1. Leinonen R, Akhtar R, Birney E, Bower L, Cerdeno-Tarraga A, Cheng Y, Cleland I, Faruque N, Goodgame N, Gibson R, et al. The European Nucleotide Archive. Nucleic Acids Res. 2011;39:D28–D31. - PMC - PubMed
    1. Kaminuma E, Kosuge T, Kodama Y, Aono H, Mashima J, Gojobori T, Sugawara H, Ogasawara O, Takagi T, Okubo K, et al. DDBJ progress report. Nucleic Acids Res. 2011;39:D22–D27. - PMC - PubMed
    1. NCBI Resource Coordinators. Database resources at the National Center for Biotechnology Information. Nucleic Acids Res. 2013;41:D8–D20. - PMC - PubMed
    1. Federhen S. The NCBI Taxonomy database. Nucleic Acids Res. 2012;40:D136–D143. - PMC - PubMed

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