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Comment

. 2013 May;45(5):470-1.

doi: 10.1038/ng.2620.

FaST-LMM-Select for addressing confounding from spatial structure and rare variants

Jennifer Listgarten, Christoph Lippert, David Heckerman

PMID: 23619783
DOI: 10.1038/ng.2620

Comment

FaST-LMM-Select for addressing confounding from spatial structure and rare variants

Jennifer Listgarten et al. Nat Genet. 2013 May.

. 2013 May;45(5):470-1.

doi: 10.1038/ng.2620.

Authors

Jennifer Listgarten, Christoph Lippert, David Heckerman

PMID: 23619783
DOI: 10.1038/ng.2620

No abstract available

PubMed Disclaimer

Comment in

Reply to: "FaST-LMM-Select for addressing confounding from spatial structure and rare variants".
Mathieson I, McVean G. Mathieson I, et al. Nat Genet. 2013 May;45(5):471. doi: 10.1038/ng.2619. Nat Genet. 2013. PMID: 23619784 No abstract available.

Comment on

Differential confounding of rare and common variants in spatially structured populations.
Mathieson I, McVean G. Mathieson I, et al. Nat Genet. 2012 Feb 5;44(3):243-6. doi: 10.1038/ng.1074. Nat Genet. 2012. PMID: 22306651 Free PMC article.

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References

1. Nat Methods. 2011 Sep 04;8(10):833-5 - PubMed
1. Nat Genet. 2010 Apr;42(4):348-54 - PubMed
1. Nat Genet. 2012 Feb 05;44(3):243-6 - PubMed
1. Biometrics. 1999 Dec;55(4):997-1004 - PubMed
1. Nat Genet. 2006 Aug;38(8):904-9 - PubMed

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