Alternative splicing and retinal degeneration
- PMID: 23647439
- PMCID: PMC4147722
- DOI: 10.1111/cge.12181
Alternative splicing and retinal degeneration
Abstract
Alternative splicing is highly regulated in tissue-specific and development-specific patterns, and it has been estimated that 15% of disease-causing point mutations affect pre-mRNA splicing. In this review, we consider the cis-acting splice site and trans-acting splicing factor mutations that affect pre-mRNA splicing and contribute to retinal degeneration. Numerous splice site mutations have been identified in retinitis pigmentosa (RP) and various cone-rod dystrophies. Mutations in alternatively spliced retina-specific exons of the widely expressed RPGR and COL2A1 genes lead primarily to X-linked RP and ocular variants of Stickler syndrome, respectively. Furthermore, mutations in general pre-mRNA splicing factors, such as PRPF31, PRPF8, and PRPF3, predominantly cause autosomal dominant RP. These findings suggest an important role for pre-mRNA splicing in retinal homeostasis and the pathogenesis of retinal degenerative diseases. The development of novel therapeutic strategies to modulate aberrant splicing, including small molecule-based therapies, has the potential to lead to new treatments for retinal degenerative diseases.
Keywords: alternative splicing; retinal degeneration; retinitis pigmentosa; small molecules.
© 2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.
Similar articles
-
Transcriptional expression of cis-acting and trans-acting splicing mutations cause autosomal dominant retinitis pigmentosa.Hum Mutat. 2008 Jun;29(6):869-78. doi: 10.1002/humu.20747. Hum Mutat. 2008. PMID: 18412284
-
Mutations in the pre-mRNA splicing-factor genes PRPF3, PRPF8, and PRPF31 in Spanish families with autosomal dominant retinitis pigmentosa.Invest Ophthalmol Vis Sci. 2003 May;44(5):2171-7. doi: 10.1167/iovs.02-0871. Invest Ophthalmol Vis Sci. 2003. PMID: 12714658
-
Three gene-targeted mouse models of RNA splicing factor RP show late-onset RPE and retinal degeneration.Invest Ophthalmol Vis Sci. 2011 Jan 5;52(1):190-8. doi: 10.1167/iovs.10-5194. Print 2011 Jan. Invest Ophthalmol Vis Sci. 2011. PMID: 20811066 Free PMC article.
-
Mutations in spliceosomal proteins and retina degeneration.RNA Biol. 2017 May 4;14(5):544-552. doi: 10.1080/15476286.2016.1191735. Epub 2016 Jun 14. RNA Biol. 2017. PMID: 27302685 Free PMC article. Review.
-
Course of Ocular Function in PRPF31 Retinitis Pigmentosa.Semin Ophthalmol. 2016;31(1-2):49-52. doi: 10.3109/08820538.2015.1114856. Semin Ophthalmol. 2016. PMID: 26959129 Free PMC article. Review.
Cited by
-
Autosomal dominant retinitis pigmentosa-associated gene PRPF8 is essential for hypoxia-induced mitophagy through regulating ULK1 mRNA splicing.Autophagy. 2018;14(10):1818-1830. doi: 10.1080/15548627.2018.1501251. Epub 2018 Aug 13. Autophagy. 2018. PMID: 30103670 Free PMC article.
-
Specialization of the photoreceptor transcriptome by Srrm3-dependent microexons is required for outer segment maintenance and vision.Proc Natl Acad Sci U S A. 2022 Jul 19;119(29):e2117090119. doi: 10.1073/pnas.2117090119. Epub 2022 Jul 12. Proc Natl Acad Sci U S A. 2022. PMID: 35858306 Free PMC article.
-
Generation of Humanized Zebrafish Models for the In Vivo Assessment of Antisense Oligonucleotide-Based Splice Modulation Therapies.Methods Mol Biol. 2022;2434:281-299. doi: 10.1007/978-1-0716-2010-6_19. Methods Mol Biol. 2022. PMID: 35213025 Free PMC article.
-
Deciphering the largest disease-associated transcript isoforms in the human neural retina with advanced long-read sequencing approaches.Genome Res. 2025 Apr 14;35(4):725-739. doi: 10.1101/gr.280060.124. Genome Res. 2025. PMID: 40037841
-
Making Biological Sense of Genetic Studies of Age-Related Macular Degeneration.Adv Exp Med Biol. 2021;1256:201-219. doi: 10.1007/978-3-030-66014-7_8. Adv Exp Med Biol. 2021. PMID: 33848003
References
-
- Bunker CH, Berson EL, Bromley WC, et al. Prevalence of retinitis pigmentosa in Maine. Am J Ophthalmol. 1984;97:357–365. - PubMed
-
- Hartong DT, Berson EL, Dryja TP. Retinitis pigmentosa. Lancet. 2006;368:1795–1809. - PubMed
-
- Black DL. Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem. 2003;72:291–336. - PubMed
-
- Sakharkar MK, Chow VTK, Kangueane P. Distributions of exons and introns in the human genome. In Silico Biol. 2004;4:387–393. - PubMed
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources