A non-curved chicken lysozyme 5' matrix attachment site is 3' followed by a strongly curved DNA sequence
- PMID: 2374712
- PMCID: PMC331089
- DOI: 10.1093/nar/18.13.3881
A non-curved chicken lysozyme 5' matrix attachment site is 3' followed by a strongly curved DNA sequence
Abstract
Matrix attachment regions (MARs) partition the genome into functional and structural loop-domains. Here, we determined the relative matrix affinity of cloned fragments of the chicken lysozyme 5' MAR. We show that this region contains a non-curved high-affinity binding site, which is 3' followed by a strongly curved DNA sequence that exhibits weak matrix binding. DNA curvature is not a physical property required for strong matrix binding. Possible biological functions of this sequence arrangement, particularly of the strongly curved DNA, are discussed.
Similar articles
-
Nuclear matrix protein ARBP recognizes a novel DNA sequence motif with high affinity.Biochemistry. 1995 Mar 28;34(12):4108-117. doi: 10.1021/bi00012a029. Biochemistry. 1995. PMID: 7696275
-
Transcription factor binding sites in the matrix attachment region (MAR) of the chicken alpha-globin gene.J Cell Biochem. 1994 Aug;55(4):513-29. doi: 10.1002/jcb.240550411. J Cell Biochem. 1994. PMID: 7962181
-
Characterisation of two intronic nuclear-matrix-attachment regions in the human DNA topoisomerase I gene.Eur J Biochem. 1994 Apr 1;221(1):411-9. doi: 10.1111/j.1432-1033.1994.tb18753.x. Eur J Biochem. 1994. PMID: 8168528
-
Specificity and functional significance of DNA interaction with the nuclear matrix: new approaches to clarify the old questions.Int Rev Cytol. 1995;162B:405-48. doi: 10.1016/s0074-7696(08)62623-6. Int Rev Cytol. 1995. PMID: 8557493 Review.
-
A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions.Trends Genet. 2003 Mar;19(3):119-24. doi: 10.1016/S0168-9525(03)00016-7. Trends Genet. 2003. PMID: 12615002 Review.
Cited by
-
Molecular characterization of a human matrix attachment region epigenetic regulator.PLoS One. 2013 Nov 14;8(11):e79262. doi: 10.1371/journal.pone.0079262. eCollection 2013. PLoS One. 2013. PMID: 24244463 Free PMC article.
-
Isolation of matrices from maize leaf nuclei: identification of a matrix-binding site adjacent to the Adh1 gene.Plant Mol Biol. 1993 Sep;22(6):1135-43. doi: 10.1007/BF00028982. Plant Mol Biol. 1993. PMID: 8400129
-
Matrix attachment regions and structural colinearity in the genomes of two grass species.Nucleic Acids Res. 1998 Feb 1;26(3):761-7. doi: 10.1093/nar/26.3.761. Nucleic Acids Res. 1998. PMID: 9443968 Free PMC article.
-
Specific binding of Drosophila nuclear protein PEP (protein on ecdysone puffs) to hsp70 DNA and RNA.Nucleic Acids Res. 1998 Sep 15;26(18):4108-15. doi: 10.1093/nar/26.18.4108. Nucleic Acids Res. 1998. PMID: 9722628 Free PMC article.
-
New nucleotide sequence data on the EMBL File Server.Nucleic Acids Res. 1990 Sep 25;18(18):5587-605. doi: 10.1093/nar/18.18.5587. Nucleic Acids Res. 1990. PMID: 2216753 Free PMC article. No abstract available.
References
Publication types
MeSH terms
Substances
Associated data
- Actions
LinkOut - more resources
Full Text Sources
Other Literature Sources
Molecular Biology Databases
Miscellaneous