A conifer genome spruces up plant phylogenomics
- PMID: 23805854
- PMCID: PMC3706884
- DOI: 10.1186/gb-2013-14-6-122
A conifer genome spruces up plant phylogenomics
Abstract
The Norway spruce genome provides key insights into the evolution of plant genomes, leading to testable new hypotheses about conifer, gymnosperm, and vascular plant evolution.
Figures
Similar articles
-
Insights into conifer giga-genomes.Plant Physiol. 2014 Dec;166(4):1724-32. doi: 10.1104/pp.114.248708. Epub 2014 Oct 27. Plant Physiol. 2014. PMID: 25349325 Free PMC article. Review.
-
Spruce giga-genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes.Plant J. 2022 Sep;111(5):1469-1485. doi: 10.1111/tpj.15889. Epub 2022 Jul 16. Plant J. 2022. PMID: 35789009
-
A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnosperm lineage leading to extant conifers.BMC Biol. 2012 Oct 26;10:84. doi: 10.1186/1741-7007-10-84. BMC Biol. 2012. PMID: 23102090 Free PMC article.
-
Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism.Plant J. 2015 Jul;83(2):189-212. doi: 10.1111/tpj.12886. Epub 2015 Jun 19. Plant J. 2015. PMID: 26017574
-
Towards decoding the conifer giga-genome.Plant Mol Biol. 2012 Dec;80(6):555-69. doi: 10.1007/s11103-012-9961-7. Epub 2012 Sep 9. Plant Mol Biol. 2012. PMID: 22960864 Review.
Cited by
-
Horsetails Are Ancient Polyploids: Evidence from Equisetum giganteum.Plant Cell. 2015 Jun;27(6):1567-78. doi: 10.1105/tpc.15.00157. Epub 2015 May 22. Plant Cell. 2015. PMID: 26002871 Free PMC article.
-
Insights into conifer giga-genomes.Plant Physiol. 2014 Dec;166(4):1724-32. doi: 10.1104/pp.114.248708. Epub 2014 Oct 27. Plant Physiol. 2014. PMID: 25349325 Free PMC article. Review.
-
Between two fern genomes.Gigascience. 2014 Sep 25;3:15. doi: 10.1186/2047-217X-3-15. eCollection 2014. Gigascience. 2014. PMID: 25324969 Free PMC article. Review.
-
Plastome Phylogenomic and Biogeographical Study on Thuja (Cupressaceae).Biomed Res Int. 2020 Jun 26;2020:8426287. doi: 10.1155/2020/8426287. eCollection 2020. Biomed Res Int. 2020. PMID: 32685531 Free PMC article.
-
The C-Fern (Ceratopteris richardii) genome: insights into plant genome evolution with the first partial homosporous fern genome assembly.Sci Rep. 2019 Dec 3;9(1):18181. doi: 10.1038/s41598-019-53968-8. Sci Rep. 2019. PMID: 31796775 Free PMC article.
References
-
- Jiao Y, Wickett NJ, Ayyampalayam S, Chanderbali AS, Landherr L, Ralph PE, Tomsho LP, Hu Y, Liang H, Soltis PS, Soltis DE, Clifton SW, Schlarbaum SE, Schuster SC, Ma H, Leebens-Mack J, dePamphilis CW. Ancestral polyploidy in seed plants and angiosperms. Nature. 2011;473:97–100. doi: 10.1038/nature09916. - DOI - PubMed
-
- Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Zhang Y, Carpenter EJ, Deyholos MK, Kutchan TM, Chanderbali AS, Soltis PS, Stevenson DW, McCombie R, Pires JC, Wong GK, Soltis DE, Depamphilis CW. A genome triplication associated with early diversification of the core eudicots. Genome Biol. 2012;13:R3. doi: 10.1186/gb-2012-13-1-r3. - DOI - PMC - PubMed
-
- Paterson AH, Wendel JF, Gundlach H, Guo H, Jenkins J, Jin D, Llewellyn D, Showmaker KC, Shu S, Udall J, Yoo MJ, Byers R, Chen W, Doron-Faigenboim A, Duke MV, Gong L, Grimwood J, Grover C, Grupp K, Hu G, Lee TH, Li J, Lin L, Liu T, Marler BS, Page JT, Roberts AW, Romanel E, Sanders WS, Szadkowski E. et al.Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature. 2012;492:423–427. doi: 10.1038/nature11798. - DOI - PubMed
-
- Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin Y, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson Å, Rilakovic N, Ritland C, Rosselló JA, Sena J. et al.The Norway spruce genome sequence and conifer genome evolution. Nature. 2013;497:579–584. doi: 10.1038/nature12211. - DOI - PubMed
MeSH terms
LinkOut - more resources
Full Text Sources
Other Literature Sources