Structural biology computing: Lessons for the biomedical research sciences
- PMID: 23828134
- DOI: 10.1002/bip.22343
Structural biology computing: Lessons for the biomedical research sciences
Abstract
The field of structural biology, whose aim is to elucidate the molecular and atomic structures of biological macromolecules, has long been at the forefront of biomedical sciences in adopting and developing computational research methods. Operating at the intersection between biophysics, biochemistry, and molecular biology, structural biology's growth into a foundational framework on which many concepts and findings of molecular biology are interpreted1 has depended largely on parallel advancements in computational tools and techniques. Without these computing advances, modern structural biology would likely have remained an exclusive pursuit practiced by few, and not become the widely practiced, foundational field it is today. As other areas of biomedical research increasingly embrace research computing techniques, the successes, failures and lessons of structural biology computing can serve as a useful guide to progress in other biomedically related research fields.
Keywords: computing; macromolecular crystallography; software; structural biology.
Copyright © 2013 Wiley Periodicals, Inc.
Similar articles
-
Achievements and challenges in structural bioinformatics and computational biophysics.Bioinformatics. 2015 Jan 1;31(1):146-50. doi: 10.1093/bioinformatics/btu769. Epub 2014 Dec 8. Bioinformatics. 2015. PMID: 25488929 Free PMC article.
-
Computational Structural Biology: Successes, Future Directions, and Challenges.Molecules. 2019 Feb 12;24(3):637. doi: 10.3390/molecules24030637. Molecules. 2019. PMID: 30759724 Free PMC article. Review.
-
Cloud computing applications for biomedical science: A perspective.PLoS Comput Biol. 2018 Jun 14;14(6):e1006144. doi: 10.1371/journal.pcbi.1006144. eCollection 2018 Jun. PLoS Comput Biol. 2018. PMID: 29902176 Free PMC article.
-
Molecular biology as a "playground" in the life sciences: Questions on the current status of molecular biology.Endeavour. 2025 Mar;49(1):100981. doi: 10.1016/j.endeavour.2025.100981. Epub 2025 Feb 17. Endeavour. 2025. PMID: 39965313 Review.
-
Trends in computational biology: a summary based on a RECOMB plenary lecture, 1999.J Comput Biol. 1999 Fall-Winter;6(3-4):459-74. doi: 10.1089/106652799318391. J Comput Biol. 1999. PMID: 10582579
Cited by
-
Collaboration gets the most out of software.Elife. 2013 Sep 10;2:e01456. doi: 10.7554/eLife.01456. Elife. 2013. PMID: 24040512 Free PMC article.
-
Introduction of the Capsules environment to support further growth of the SBGrid structural biology software collection.Acta Crystallogr D Struct Biol. 2024 Jun 1;80(Pt 6):439-450. doi: 10.1107/S2059798324004881. Epub 2024 Jun 4. Acta Crystallogr D Struct Biol. 2024. PMID: 38832828 Free PMC article.
-
Overview of Molecular Modeling in Drug Discovery with a Special Emphasis on the Applications of Artificial Intelligence.Methods Mol Biol. 2025;2952:1-13. doi: 10.1007/978-1-0716-4690-8_1. Methods Mol Biol. 2025. PMID: 40553324 Review.
-
Structural Organization and Dynamics of Homodimeric Cytohesin Family Arf GTPase Exchange Factors in Solution and on Membranes.Structure. 2019 Dec 3;27(12):1782-1797.e7. doi: 10.1016/j.str.2019.09.007. Epub 2019 Oct 7. Structure. 2019. PMID: 31601460 Free PMC article.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources
Other Literature Sources
Research Materials