Get your high-quality low-cost genome sequence
- PMID: 24636622
- DOI: 10.1016/j.tplants.2014.02.003
Get your high-quality low-cost genome sequence
Abstract
The study of whole-genome sequences has become essential for almost all branches of biological research. Next-generation sequencing (NGS) has revolutionized the scalability, speed, and resolution of sequencing and brought genomic science within reach of academic laboratories that study non-model organisms. Here, we show that a high-quality draft genome of a eukaryote can be obtained at relatively low cost by exploiting a hybrid combination of sequencing strategies.
Keywords: eukaryote; fungal genome; genome structure; hybrid assembly; next-generation sequencing (NGS); repetitive element.
Copyright © 2014 Elsevier Ltd. All rights reserved.
Similar articles
-
Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome.mBio. 2015 Aug 18;6(4):e00936-15. doi: 10.1128/mBio.00936-15. mBio. 2015. PMID: 26286689 Free PMC article.
-
Preparation of normalized cDNA libraries for 454 Titanium transcriptome sequencing.Methods Mol Biol. 2012;888:119-33. doi: 10.1007/978-1-61779-870-2_8. Methods Mol Biol. 2012. PMID: 22665279
-
Low-Cost, High-Throughput Sequencing of DNA Assemblies Using a Highly Multiplexed Nextera Process.ACS Synth Biol. 2015 Jul 17;4(7):860-6. doi: 10.1021/sb500362n. Epub 2015 May 6. ACS Synth Biol. 2015. PMID: 25913499
-
What can next generation sequencing do for you? Next generation sequencing as a valuable tool in plant research.Plant Biol (Stuttg). 2010 Nov;12(6):831-41. doi: 10.1111/j.1438-8677.2010.00373.x. Plant Biol (Stuttg). 2010. PMID: 21040298 Review.
-
Current state-of-art of sequencing technologies for plant genomics research.Brief Funct Genomics. 2012 Jan;11(1):3-11. doi: 10.1093/bfgp/elr045. Brief Funct Genomics. 2012. PMID: 22345601 Review.
Cited by
-
Genome-Enhanced Detection and Identification (GEDI) of plant pathogens.PeerJ. 2018 Feb 22;6:e4392. doi: 10.7717/peerj.4392. eCollection 2018. PeerJ. 2018. PMID: 29492338 Free PMC article.
-
Unraveling genetic variation among white spruce families generated through different breeding strategies: Heritability, growth, physiology, hormones and gene expression.Front Plant Sci. 2023 Apr 3;14:1052425. doi: 10.3389/fpls.2023.1052425. eCollection 2023. Front Plant Sci. 2023. PMID: 37077625 Free PMC article.
-
Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters.BMC Genomics. 2017 Aug 29;18(1):667. doi: 10.1186/s12864-017-4083-x. BMC Genomics. 2017. PMID: 28851275 Free PMC article.
-
Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome.mBio. 2015 Aug 18;6(4):e00936-15. doi: 10.1128/mBio.00936-15. mBio. 2015. PMID: 26286689 Free PMC article.
-
Biotechnological strategies and tools for Plum pox virus resistance: trans-, intra-, cis-genesis, and beyond.Front Plant Sci. 2015 Jun 8;6:379. doi: 10.3389/fpls.2015.00379. eCollection 2015. Front Plant Sci. 2015. PMID: 26106397 Free PMC article. Review.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources
Other Literature Sources