Novel methods based on (13)C detection to study intrinsically disordered proteins
- PMID: 24656084
- DOI: 10.1016/j.jmr.2013.10.020
Novel methods based on (13)C detection to study intrinsically disordered proteins
Abstract
Intrinsically disordered proteins (IDPs) are characterized by highly flexible solvent exposed backbones and can sample many different conformations. These properties confer them functional advantages, complementary to those of folded proteins, which need to be characterized to expand our view of how protein structural and dynamic features affect function beyond the static picture of a single well defined 3D structure that has influenced so much our way of thinking. NMR spectroscopy provides a unique tool for the atomic resolution characterization of highly flexible macromolecules in general and of IDPs in particular. The peculiar properties of IDPs however have profound effects on spectroscopic parameters. It is thus worth thinking about these aspects to make the best use of the great potential of NMR spectroscopy to contribute to this fascinating field of research. In particular, after many years of dealing with exclusively heteronuclear NMR experiments based on (13)C direct detection, we would like here to address their relevance when studying IDPs.
Keywords: 13C direct detection; IDP; Intrinsically disordered proteins; NMR.
Copyright © 2013 Elsevier Inc. All rights reserved.
Similar articles
-
NMR Spectroscopic Studies of the Conformational Ensembles of Intrinsically Disordered Proteins.Adv Exp Med Biol. 2015;870:149-85. doi: 10.1007/978-3-319-20164-1_5. Adv Exp Med Biol. 2015. PMID: 26387102 Review.
-
NMR Methods for the Study of Instrinsically Disordered Proteins Structure, Dynamics, and Interactions: General Overview and Practical Guidelines.Adv Exp Med Biol. 2015;870:49-122. doi: 10.1007/978-3-319-20164-1_3. Adv Exp Med Biol. 2015. PMID: 26387100 Review.
-
13C APSY-NMR for sequential assignment of intrinsically disordered proteins.J Biomol NMR. 2018 Mar;70(3):167-175. doi: 10.1007/s10858-018-0167-4. Epub 2018 Feb 28. J Biomol NMR. 2018. PMID: 29492731
-
Ensemble Calculation for Intrinsically Disordered Proteins Using NMR Parameters.Adv Exp Med Biol. 2015;870:123-47. doi: 10.1007/978-3-319-20164-1_4. Adv Exp Med Biol. 2015. PMID: 26387101 Review.
-
Conformational propensities of intrinsically disordered proteins from NMR chemical shifts.Chemphyschem. 2013 Sep 16;14(13):3034-45. doi: 10.1002/cphc.201300387. Epub 2013 Jun 21. Chemphyschem. 2013. PMID: 23794453 Review.
Cited by
-
Roles, Characteristics, and Analysis of Intrinsically Disordered Proteins: A Minireview.Life (Basel). 2020 Nov 30;10(12):320. doi: 10.3390/life10120320. Life (Basel). 2020. PMID: 33266184 Free PMC article. Review.
-
Linking functions: an additional role for an intrinsically disordered linker domain in the transcriptional coactivator CBP.Sci Rep. 2017 Jul 5;7(1):4676. doi: 10.1038/s41598-017-04611-x. Sci Rep. 2017. PMID: 28680062 Free PMC article.
-
HN-NCA heteronuclear TOCSY-NH experiment for (1)H(N) and (15)N sequential correlations in ((13)C, (15)N) labelled intrinsically disordered proteins.J Biomol NMR. 2015 Oct;63(2):201-12. doi: 10.1007/s10858-015-9976-x. Epub 2015 Aug 18. J Biomol NMR. 2015. PMID: 26282620
-
Optimal 13C NMR investigation of intrinsically disordered proteins at 1.2 GHz.Nat Protoc. 2024 Feb;19(2):406-440. doi: 10.1038/s41596-023-00921-9. Epub 2023 Dec 12. Nat Protoc. 2024. PMID: 38087081 Review.
-
Easy and unambiguous sequential assignments of intrinsically disordered proteins by correlating the backbone 15N or 13C' chemical shifts of multiple contiguous residues in highly resolved 3D spectra.J Biomol NMR. 2015 Feb;61(2):109-21. doi: 10.1007/s10858-014-9890-7. Epub 2015 Jan 11. J Biomol NMR. 2015. PMID: 25577242
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources