Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2014 Oct;70(Pt 10):2520-32.
doi: 10.1107/S1399004714005185. Epub 2014 Sep 30.

How to make deposition of images a reality

Affiliations

How to make deposition of images a reality

J Mitchell Guss et al. Acta Crystallogr D Biol Crystallogr. 2014 Oct.

Abstract

The IUCr Diffraction Data Deposition Working Group is investigating the rationale and policies for routine deposition of diffraction images (and other primary experimental data sets). An information-management framework is described that should inform policy directions, and some of the technical and other issues that need to be addressed in an effort to achieve such a goal are analysed. In the near future, routine data deposition could be encouraged at one of the growing number of institutional repositories that accept data sets or at a generic data-publishing web repository service. To realise all of the potential benefits of depositing diffraction data, specialized archives would be preferable. Funding such an initiative will be challenging.

Keywords: data deposition.

PubMed Disclaimer

Figures

Figure 1
Figure 1
Example of a research publication (a) providing links (as supplementary materials) to copies of the experimental diffraction images (Tanley et al., 2013 ▶) on a server at the University to which some of the authors are affiliated (b) and mirrored within the MyTARDIS system (c). The MyTARDIS interface summarizes the number of data sets, the number of files within each, the size of the individual data sets and access rights. It alo provides facilities to download individual data sets or the entire collection (but not individual files). On the local website established at their institution (b) the authors provide similar summary metadata, but have chosen also to supply photographs of the diffractometers used, which give additional information about the experimental geometry.
Figure 1
Figure 1
Example of a research publication (a) providing links (as supplementary materials) to copies of the experimental diffraction images (Tanley et al., 2013 ▶) on a server at the University to which some of the authors are affiliated (b) and mirrored within the MyTARDIS system (c). The MyTARDIS interface summarizes the number of data sets, the number of files within each, the size of the individual data sets and access rights. It alo provides facilities to download individual data sets or the entire collection (but not individual files). On the local website established at their institution (b) the authors provide similar summary metadata, but have chosen also to supply photographs of the diffractometers used, which give additional information about the experimental geometry.

References

    1. Androulakis, S. et al. (2008). Acta Cryst. D64, 810–814. - PubMed
    1. Berman, H. M., Henrick, K. & Nakamura, H. (2003). Nature Struct. Biol. 10, 980. - PubMed
    1. Bernstein, H. J. (2007). Review of the Status of imgCIF http://www.medsbio.org/meetings/BSR_2007_imgCIF_Workshop/HJB_Manchester_....
    1. Bernstein, H. J. & Hammersley, A. P. (2005). International Tables for Crystallography, Vol. G, edited by S. R. Hall & B. McMahon, pp. 37–43. Dordrecht: Springer.
    1. Bernstein, H. J., Sloan, J. M., Winter, G., Richter, T. S., NIAC & COMCIFS (2013). Coping with BIG DATA Image Formats: Integration of CBF, NeXus and HDF5 American Crystallographic Association Meeting, Poster T-16. http://www.eposters.net/poster/coping-with-big-data-image-formats-integr....