Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
Comparative Study
. 2015 Apr;59(3):324-35.
doi: 10.1093/annhyg/meu098. Epub 2014 Nov 27.

Comparison of ordinal and nominal classification trees to predict ordinal expert-based occupational exposure estimates in a case-control study

Affiliations
Comparative Study

Comparison of ordinal and nominal classification trees to predict ordinal expert-based occupational exposure estimates in a case-control study

David C Wheeler et al. Ann Occup Hyg. 2015 Apr.

Abstract

Objectives: To evaluate occupational exposures in case-control studies, exposure assessors typically review each job individually to assign exposure estimates. This process lacks transparency and does not provide a mechanism for recreating the decision rules in other studies. In our previous work, nominal (unordered categorical) classification trees (CTs) generally successfully predicted expert-assessed ordinal exposure estimates (i.e. none, low, medium, high) derived from occupational questionnaire responses, but room for improvement remained. Our objective was to determine if using recently developed ordinal CTs would improve the performance of nominal trees in predicting ordinal occupational diesel exhaust exposure estimates in a case-control study.

Methods: We used one nominal and four ordinal CT methods to predict expert-assessed probability, intensity, and frequency estimates of occupational diesel exhaust exposure (each categorized as none, low, medium, or high) derived from questionnaire responses for the 14983 jobs in the New England Bladder Cancer Study. To replicate the common use of a single tree, we applied each method to a single sample of 70% of the jobs, using 15% to test and 15% to validate each method. To characterize variability in performance, we conducted a resampling analysis that repeated the sample draws 100 times. We evaluated agreement between the tree predictions and expert estimates using Somers' d, which measures differences in terms of ordinal association between predicted and observed scores and can be interpreted similarly to a correlation coefficient.

Results: From the resampling analysis, compared with the nominal tree, an ordinal CT method that used a quadratic misclassification function and controlled tree size based on total misclassification cost had a slightly better predictive performance that was statistically significant for the frequency metric (Somers' d: nominal tree = 0.61; ordinal tree = 0.63) and similar performance for the probability (nominal = 0.65; ordinal = 0.66) and intensity (nominal = 0.65; ordinal = 0.65) metrics. The best ordinal CT predicted fewer cases of large disagreement with the expert assessments (i.e. no exposure predicted for a job with high exposure and vice versa) compared with the nominal tree across all of the exposure metrics. For example, the percent of jobs with expert-assigned high intensity of exposure that the model predicted as no exposure was 29% for the nominal tree and 22% for the best ordinal tree.

Conclusions: The overall agreements were similar across CT models; however, the use of ordinal models reduced the magnitude of the discrepancy when disagreements occurred. As the best performing model can vary by situation, researchers should consider evaluating multiple CT methods to maximize the predictive performance within their data.

Keywords: classification; diesel exhaust; occupational exposure; ordinal data; statistical learning.

PubMed Disclaimer

Figures

Figure 1
Figure 1
Distribution of Somers’ d comparing expert estimates and estimates from five CT models for exposure probability, intensity, and frequency in the resampling analysis.

References

    1. Agresti A. (2002). Categorical data analysis. 2nd edn. Hoboken, NJ: John Wiley & Sons.
    1. Archer K. (2010). rpartOrdinal: an R package for deriving a classification tree for predicting an ordinal response. J Stat Softw; 34: 1–17. - PMC - PubMed
    1. Archer K, Mas V. (2009). Ordinal response prediction using bootstrap aggregation, with application to a high-throughput methylation data set. Stat Med; 28: 3597–610. - PMC - PubMed
    1. Behrens T, Mester B, Fritschi L. (2012). Sharing the knowledge gained from occupational cohort studies: a call for action. Occup Environ Med; 69: 444–8. - PubMed
    1. Breiman L, Friedman J, Olshen R, et al. (1984). Classification and regression trees. Pacific Groove, CA: Wadsworth & Brooks/Cole Advanced Books & Software.

Publication types

Substances

LinkOut - more resources