New paradigms for metabolic modeling of human cells
- PMID: 25559199
- DOI: 10.1016/j.copbio.2014.12.013
New paradigms for metabolic modeling of human cells
Abstract
Abnormalities in cellular functions are associated with the progression of human diseases, often resulting in metabolic reprogramming. GEnome-scale metabolic Models (GEMs) have enabled studying global metabolic reprogramming in connection with disease development in a systematic manner. Here we review recent work on reconstruction of GEMs for human cell/tissue types and cancer, and the use of GEMs for identification of metabolic changes occurring in response to disease development. We further discuss how GEMs can be used for the development of efficient therapeutic strategies. Finally, challenges in integration of cell/tissue models for simulation of whole body functions as well as integration of GEMs with other biological networks for generating complete cell/tissue models are presented.
Copyright © 2014 Elsevier Ltd. All rights reserved.
Similar articles
-
Genome-scale modeling of human metabolism - a systems biology approach.Biotechnol J. 2013 Sep;8(9):985-96. doi: 10.1002/biot.201200275. Epub 2013 Apr 24. Biotechnol J. 2013. PMID: 23613448 Review.
-
Genome-scale metabolic models as platforms for identification of novel genes as antimicrobial drug targets.Future Microbiol. 2018 Mar;13:455-467. doi: 10.2217/fmb-2017-0195. Epub 2018 Feb 22. Future Microbiol. 2018. PMID: 29469596 Review.
-
Addressing the heterogeneity in liver diseases using biological networks.Brief Bioinform. 2021 Mar 22;22(2):1751-1766. doi: 10.1093/bib/bbaa002. Brief Bioinform. 2021. PMID: 32201876 Free PMC article. Review.
-
Genome scale models of yeast: towards standardized evaluation and consistent omic integration.Integr Biol (Camb). 2015 Aug;7(8):846-58. doi: 10.1039/c5ib00083a. Integr Biol (Camb). 2015. PMID: 26079294 Review.
-
Genome-Scale Metabolic Modeling from Yeast to Human Cell Models of Complex Diseases: Latest Advances and Challenges.Methods Mol Biol. 2019;2049:329-345. doi: 10.1007/978-1-4939-9736-7_19. Methods Mol Biol. 2019. PMID: 31602620
Cited by
-
Networking in metabolism and human disease.Oncotarget. 2015 Jun 30;6(18):15708-9. doi: 10.18632/oncotarget.4561. Oncotarget. 2015. PMID: 26158544 Free PMC article. No abstract available.
-
Elucidating the Reprograming of Colorectal Cancer Metabolism Using Genome-Scale Metabolic Modeling.Front Oncol. 2019 Jul 30;9:681. doi: 10.3389/fonc.2019.00681. eCollection 2019. Front Oncol. 2019. PMID: 31417867 Free PMC article.
-
ESS: A Tool for Genome-Scale Quantification of Essentiality Score for Reaction/Genes in Constraint-Based Modeling.Front Physiol. 2018 Sep 28;9:1355. doi: 10.3389/fphys.2018.01355. eCollection 2018. Front Physiol. 2018. PMID: 30323767 Free PMC article.
-
Genome-scale study reveals reduced metabolic adaptability in patients with non-alcoholic fatty liver disease.Nat Commun. 2016 Feb 3;7:8994. doi: 10.1038/ncomms9994. Nat Commun. 2016. PMID: 26839171 Free PMC article.
-
Investigating intestinal epithelium metabolic dysfunction in celiac disease using personalized genome-scale models.BMC Med. 2025 Feb 21;23(1):95. doi: 10.1186/s12916-025-03854-0. BMC Med. 2025. PMID: 39984962 Free PMC article.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources
Other Literature Sources