Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2014 Jul 1:3:138.
doi: 10.12688/f1000research.4642.1. eCollection 2014.

The Cytoscape app article collection

Affiliations

The Cytoscape app article collection

Alexander R Pico et al. F1000Res. .

Abstract

As a network visualization and analysis platform, Cytoscape relies on apps to provide domain-specific features and functions. There are many resources available to support Cytoscape app development and distribution, including the Cytoscape App Store and an online "cookbook" for app developers. This article collection is another resource to help researchers find out more about relevant Cytoscape apps and to provide app developers with useful implementation tips. The collection will grow over time as new Cytoscape apps are developed and published.

PubMed Disclaimer

Conflict of interest statement

Competing interests: No competing interests were disclosed.

References

    1. Shannon P, Markiel A, Ozier O, et al. : Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003;13(11):2498–2504. 10.1101/gr.1239303 - DOI - PMC - PubMed
    1. Cline MS, Smoot M, Cerami E, et al. : Integration of biological networks and gene expression data using Cytoscape. Nat Protoc. 2007;2(10):2366–2382. 10.1038/nprot.2007.324 - DOI - PMC - PubMed
    1. Smoot ME, Ono K, Ruscheinski J, et al. : Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics. 2011;27(3):431–432. 10.1093/bioinformatics/btq675 - DOI - PMC - PubMed
    1. Saito R, Smoot ME, Ono K, et al. : A travel guide to Cytoscape plugins. Nat Methods. 2012;9(11):1069–1076. 10.1038/nmeth.2212 - DOI - PMC - PubMed
    1. Lotia S, Montojo J, Dong Y, et al. : Cytoscape app store. Bioinformatics. 2013;29(10):1350–1351. 10.1093/bioinformatics/btt138 - DOI - PMC - PubMed

LinkOut - more resources