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. 2015 Feb 12;10(2):e0118195.
doi: 10.1371/journal.pone.0118195. eCollection 2015.

Quantification of cell-free mSHOX2 Plasma DNA for therapy monitoring in advanced stage non-small cell (NSCLC) and small-cell lung cancer (SCLC) patients

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Quantification of cell-free mSHOX2 Plasma DNA for therapy monitoring in advanced stage non-small cell (NSCLC) and small-cell lung cancer (SCLC) patients

Bernd Schmidt et al. PLoS One. .

Abstract

Purpose: Most patients suffering from advanced lung cancer die within a few months. To exploit new therapy regimens we need better methods for the assessment of a therapy response.

Material and methods: In a pilot study we prospectively enrolled 36 patients with advanced NSCLC and SCLC (34 stage IV, 2 stage IIIB) of whom 34 received standard platinum-based chemo/radiotherapy and two were treated with a tyrosine kinase inhibitor. We measured the levels of extracellular methylated SHOX2 DNA (mSHOX2) in plasma before and during therapy until re-staging. The mSHOX2 analysis was blinded with respect to the clinical data making it an observational study.

Results: According to the re-staging of 31 first-line patients, 19 patients were classified as non-responders while 12 patients were in the responder group. We observed a tight correlation between radiological data and the change of plasma mSHOX2 level as the equivalent for a therapy response. A ROC analysis showed a high discriminatory power for both patient groups already one week after therapy start (AUC 0.844). Additionally, a Kaplan-Meier and Cox Proportional Hazards analyses revealed a strong relationship between survival and plasma mSHOX2 value p ≤ 0.001 (hazard ratio 11.08) providing some evidence for mSHOX2 also being a predictive marker.

Conclusion: The longitudinal measurement of extracellular plasma mSHOX2 DNA yields information about the response to cytotoxic treatment and allows an early assessment of treatment response for lung cancer patients. If confirmed in a larger study this would be a valuable tool for selecting and guiding a cytotoxic treatment.

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Conflict of interest statement

Competing Interests: Volker Liebenberg has been employed by Metanomics Health GmbH from 2010 until July 2012. Metanomics Health GmbH is a 100% subsidiary of BASF, chemical company and has not been active in research or development of DNA related lung cancer biomarkers before or during the time of Volker Liebenberg’s employment. Volker Liebenberg and Dimo Dietrich have been employees and are stockholders of Epigenomics AG, a company that aims to commercialize the DNA methylation marker SHOX2. Volker Liebenberg and Dimo Dietrich are coinventors and own patents on methylation biomarkers and related technologies. Patents: “A Method for Amplification of Nucleic Acids” (WO2006113770), “A Method for the Carry-over Protection in DNA Amplification Systems Targeting Methylation Analysis Achieved by a Modified Pre-treatment of Nucleic Acids” (WO2006040187). These patents are commercially exploited by Epigenomics AG. Volker Liebenberg and Dimo Dietrich receive inventor’s compensation from Epigenomics AG. Michael Fleischhacker, Bernd Schmidt and Dimo Dietrich are coinventors of a patent. Patent: “Methods for assessing the treatment response of cancer patients and for treating cancer patients by analysing CpG methylation” (Application Number: 62076674, patent pending). There are no further patents, products in development or marketed products to declare. This does not alter the authors’ adherence to all the PLOS ONE policies on sharing data and materials.

Figures

Fig 1
Fig 1. Trend curves for patients responding (black curves) and not responding (gray curves) to the therapy.
The patients included in this figure are limited to the ones with a baseline mSHOX2 value of at least 1% PMR. The first blood draw (x = 0) is the point of diagnosis, i.e. before treatment and defines the baseline methylation of SHOX2. For the first eight blood draws Bonferroni corrected p-values from unpaired two sample Wilcox tests are given at the bottom.
Fig 2
Fig 2. ROC curves for the discrimination of responders from non-responder at different blood draws.
Only patients with a baseline PMR ≥ 1% were included. The first blood draw (time 0) is the point before treatment (= baseline methylation). Blood draws 1 to 8 were taken during the therapy at intervals of 7 to 10 days.
Fig 3
Fig 3. Cox Proportional Hazards and Kaplan-Meier survival analysis of all 36 patients.
The median plasma mSHOX2 value at baseline was 2.88% PMR, while the median one week after therapy start was 2.16% PMR.

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