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. 2015 Mar 9;10(3):e0120784.
doi: 10.1371/journal.pone.0120784. eCollection 2015.

Investigating different duplication pattern of essential genes in mouse and human

Debarun Acharya  1 , Dola Mukherjee  1 , Soumita Podder  1 , Tapash C Ghosh  1
Affiliations

Investigating different duplication pattern of essential genes in mouse and human

Debarun Acharya et al. PLoS One. .

Abstract

Gene duplication is one of the major driving forces shaping genome and organism evolution and thought to be itself regulated by some intrinsic properties of the gene. Comparing the essential genes among mouse and human, we observed that the essential genes avoid duplication in mouse while prefer to remain duplicated in humans. In this study, we wanted to explore the reasons behind such differences in gene essentiality by cross-species comparison of human and mouse. Moreover, we examined essential genes that are duplicated in humans are functionally more redundant than that in mouse. The proportion of paralog pseudogenization of essential genes is higher in mouse than that of humans. These duplicates of essential genes are under stringent dosage regulation in human than in mouse. We also observed slower evolutionary rate in the paralogs of human essential genes than the mouse counterpart. Together, these results clearly indicate that human essential genes are retained as duplicates to serve as backed up copies that may shield themselves from harmful mutations.

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Conflict of interest statement

Competing Interests: The authors have declared that no competing interests exist.

Figures

Fig 1
Fig 1. Average functional distance between mouse and human essential genes among three groups according to their count of GO terms.
Group A with GO count 1–4, Group B with GO count 5–8 and Group C with GO count >8 (error bars indicate standard errors).
Fig 2
Fig 2. Mean dN/dS value of mouse and human essential genes’ paralogs (error bars indicate standard errors).
See this image and copyright information in PMC

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