Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2015 Jun;62(2):121-7.
doi: 10.1007/s10858-015-9929-4. Epub 2015 Apr 22.

Assessment of chemical exchange in tryptophan-albumin solution through (19)F multicomponent transverse relaxation dispersion analysis

Affiliations

Assessment of chemical exchange in tryptophan-albumin solution through (19)F multicomponent transverse relaxation dispersion analysis

Ping-Chang Lin. J Biomol NMR. 2015 Jun.

Abstract

A number of NMR methods possess the capability of probing chemical exchange dynamics in solution. However, certain drawbacks limit the applications of these NMR approaches, particularly, to a complex system. Here, we propose a procedure that integrates the regularized nonnegative least squares (NNLS) analysis of multiexponential T2 relaxation into Carr-Purcell-Meiboom-Gill (CPMG) relaxation dispersion experiments to probe chemical exchange in a multicompartmental system. The proposed procedure was validated through analysis of (19)F T2 relaxation data of 6-fluoro-DL-tryptophan in a two-compartment solution with and without bovine serum albumin. Given the regularized NNLS analysis of a T2 relaxation curve acquired, for example, at the CPMG frequency υ CPMG = 125, the nature of two distinct peaks in the associated T2 distribution spectrum indicated 6-fluoro-DL-tryptophan either retaining the free state, with geometric mean */multiplicative standard deviation (MSD) = 1851.2 ms */1.51, or undergoing free/albumin-bound interconversion, with geometric mean */MSD = 236.8 ms */1.54, in the two-compartment system. Quantities of the individual tryptophan species were accurately reflected by the associated T2 peak areas, with an interconversion state-to-free state ratio of 0.45 ± 0.11. Furthermore, the CPMG relaxation dispersion analysis estimated the exchange rate between the free and albumin-bound states in this fluorinated tryptophan analog and the corresponding dissociation constant of the fluorinated tryptophan-albumin complex in the chemical-exchanging, two-compartment system.

PubMed Disclaimer

Conflict of interest statement

The author declares that there is no conflict of interest.

Figures

Figure 1
Figure 1
Skematic of the two-compartmental 6F-Trp system. A 3-mm inner diameter tube made of semi-permeable dialysis membrane was inserted into a 5-mm NMR tube to separate the BSA-6F-Trp complex solution from the sole 6F-Trp solution for the 19F transverse relaxation experiments.
Figure 2
Figure 2
T2 distributions resulting from the regularized NNLS analysis of 19F T2 relaxation curves. The echo time present in the CPMG pulse sequence was τCPMG = 2 ms. A single T2 component was depicted in (A) the 6F-Trp solution and (B) the BSA-6F-Trp complex solution, respectively, while (C) two T2 components were observed in the two-compartmental 6F-Trp system. The χ2 statistics for goodness-of-fit tests of the regularized NNLS-derived fits of T2 relaxation curves exhibited χ2 = 2317, p = 0.41 for the 6F-Trp solution (Figure S1A), χ2 = 2370, p = 0.16 for the BSA-6F-Trp complex solution (Figure S1B), and χ2 = 2206, p = 0.92 for the two-compartmental 6F-Trp system (Figure S1C), all with degrees of freedom = 2303.
Figure 3
Figure 3
19F effective transverse relaxation rates as a function of CPMG field strength for 6F-Trp compartments. Relaxation dispersion data collected in free/bound exchanging 6F-Trp are presented with the associated fitting curves. The fitting curves to relaxation dispersion data using Eq. 2 (slow exchange expression) are displayed in dash lines, while those using Eq. 3 (skewed population PA > PB approximation) are in solid lines. The relaxation dispersions are plotted in (A) R2eff vs. CMPG frequency and (B) R2eff vs. half of echo-spacing τCPMG.

References

    1. Baldwin AJ, Kay LE. NMR spectroscopy brings invisible protein states into focus. Nat Chem Biol. 2009;5:808–814. doi: 10.1038/nchembio.238. - DOI - PubMed
    1. Cao B, Endsley S, Andersen NH. 19F NMR studies of tryptophan/serum albumin binding. Bioorg Med Chem. 2003;11:69–75. - PubMed
    1. Chanut E, Zini R, Trouvin JH, Riant P, Tillement JP, Jacquot C. Albumin binding and brain uptake of 6-fluoro-DL-tryptophan: competition with L-tryptophan. Biochem Pharmacol. 1992;44:2082–2085. - PubMed
    1. Fielding L, Rutherford S, Fletcher D. Determination of protein-ligand binding affinity by NMR: observations from serum albumin model systems. Magn Reson Chem. 2005;43:463–470. doi: 10.1002/mrc.1574. - DOI - PubMed
    1. Gambarota G, Cairns BE, Berde CB, Mulkern RV. Osmotic effects on the T2 relaxation decay of in vivo muscle. Magnetic Resonance in Medicine. 2001;46:592–599. doi: 10.1002/mrm.1232. - DOI - PubMed

Publication types

MeSH terms

LinkOut - more resources