Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2015 Apr;5(8):1585-600.
doi: 10.1002/ece3.1458. Epub 2015 Mar 17.

The effect of biogeographic and phylogeographic barriers on gene flow in the brown smoothhound shark, Mustelus henlei, in the northeastern Pacific

Affiliations

The effect of biogeographic and phylogeographic barriers on gene flow in the brown smoothhound shark, Mustelus henlei, in the northeastern Pacific

Chris L Chabot et al. Ecol Evol. 2015 Apr.

Abstract

We assessed the effects of the prominent biogeographic (Point Conception and the Peninsula of Baja California) and phylogeographic barriers (Los Angeles Region) of the northeastern Pacific on the population connectivity of the brown smoothhound shark, Mustelus henlei (Triakidae). Data from the mitochondrial control region and six nuclear microsatellite loci revealed significant population structure among three populations: northern (San Francisco), central (Santa Barbara, Santa Catalina, Punta Lobos, and San Felipe), and southern (Costa Rica). Patterns of long-term and contemporary migration were incongruent, with long-term migration being asymmetric and occurring in a north to south direction and a lack of significant contemporary migration observed between localities with the exception of Punta Lobos that contributed migrants to all localities within the central population. Our findings indicate that Point Conception may be restricting gene flow between the northern and central populations whereas barriers to gene flow within the central population would seem to be ineffective; additionally, a contemporary expansion of tropical M. henlei into subtropical and temperate waters may have been observed.

Keywords: Microsatellite; Triakidae; mitochondria; phylogeography; shark.

PubMed Disclaimer

Figures

Figure 1
Figure 1
Mustelus henlei.
Figure 2
Figure 2
Median-joining network of mtCR haplotypes for Mustelus henlei. Circles represent individual haplotypes with size proportional to frequency, branches indicate mutations, and black circles are hypothetical ancestors. Localities are as follows: San Francisco Bay (Blue), Santa Barbara (Yellow), Santa Catalina Island (Green), Punta Lobos (Gray), San Felipe (Red), and Costa Rica (White). Numbers of samples per circle size are represented at bottom right.
Figure 3
Figure 3
Population assignment of Mustelus henlei as estimated by STRUCTURE. Each individual is represented as a single histogram with percentage of ancestry on the y-axis and populations on the x-axis (SF = San Francisco, SB = Santa Barbara, SC = Santa Catalina, PL = Punta Lobos, GOC = San Felipe, and CR = Costa Rica). Spaces have been inserted between sample localities.
Figure 4
Figure 4
Long-term and contemporary patterns of gene flow (Nem) for Mustelus henlei. Localities are labeled as follows: San Francisco (SF), Santa Barbara (SB), Santa Catalina (SC), Punta Lobos (PB), San Felipe (GC), and Costa Rica (CR). Thin lines depict the results of MIGRATE-N analyses and the general direction of gene flow as averaged across localities from the point of origin. Estimates of Nem with credible sets (CS) not overlapping 0 are provided on either side of lines (mtCR to the left and microsatellites to the right). Bold lines depict the direction of gene flow as estimated by BAYESASS with Nem values with CS's not including 0 provided.

References

    1. Aris-Brosou S. Excoffier L. The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism. Mol. Biol. Evol. 1996;13:494–504. - PubMed
    1. Avise JC. Molecular markers, natural history, and evolution. 2nd ed. Sunderland, MA: Sinauer Associates; 2004.
    1. Bandelt HJ, Forster P. Röhl A. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 1999;16:37–48. - PubMed
    1. Beerli P. Felsenstein J. Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc. Natl Acad. Sci. USA. 2001;98:4563–4568. - PMC - PubMed
    1. Bernardi G. Barriers to gene flow in Embiotoca jacksoni, a marine fish lacking a pelagic larval stage. Evolution. 2000;54:226–237. - PubMed

LinkOut - more resources