Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2015 May 7:4:e05519.
doi: 10.7554/eLife.05519.

RIPOSTE: a framework for improving the design and analysis of laboratory-based research

Affiliations

RIPOSTE: a framework for improving the design and analysis of laboratory-based research

Nicholas Gd Masca et al. Elife. .

Abstract

Lack of reproducibility is an ongoing problem in some areas of the biomedical sciences. Poor experimental design and a failure to engage with experienced statisticians at key stages in the design and analysis of experiments are two factors that contribute to this problem. The RIPOSTE (Reducing IrreProducibility in labOratory STudiEs) framework has been developed to support early and regular discussions between scientists and statisticians in order to improve the design, conduct and analysis of laboratory studies and, therefore, to reduce irreproducibility. This framework is intended for use during the early stages of a research project, when specific questions or hypotheses are proposed. The essential points within the framework are explained and illustrated using three examples (a medical equipment test, a macrophage study and a gene expression study). Sound study design minimises the possibility of bias being introduced into experiments and leads to higher quality research with more reproducible results.

Keywords: experimental design; human biology; interdisciplinary research; medicine; none; reproducibility; science forum; statistical design.

PubMed Disclaimer

Conflict of interest statement

The authors declare that no competing interests exist.

Figures

Box 1 Figure 1.
Box 1 Figure 1.. Equipment set-up for elastomer pump experiment.
DOI: http://dx.doi.org/10.7554/eLife.05519.005
Box 2 Figure 1.
Box 2 Figure 1.. Production of differentiated macrophages from donor samples.
DOI: http://dx.doi.org/10.7554/eLife.05519.007
Box 2 Figure 2.
Box 2 Figure 2.. Infection and treatment of donor macrophages.
DOI: http://dx.doi.org/10.7554/eLife.05519.008

References

    1. Altman DG. The time has come to register diagnostic and prognostic research. Clinical Chemistry. 2014;60:580–582. doi: 10.1373/clinchem.2013.220335. - DOI - PubMed
    1. Altman DG, McShane LM, Sauerbrei W, Taube SE. Reporting recommendations for tumor marker prognostic studies (REMARK): explanation and elaboration. BMC Medicine. 2012;10:51. doi: 10.1186/1741-7015-10-51. - DOI - PMC - PubMed
    1. Baggerly KA, Coombes KR. Deriving chemosensitivity from cell lines: forensic bioinformatics and reproducible research in high-throughput biology. Annals of Applied Statistics. 2009;3:1309–1334. doi: 10.1214/09-AOAS291. - DOI
    1. Barnhart HX, Kosinski AS, Haber MJ. Assessing individual agreement. Journal of Biopharmaceutical Statistics. 2007;17:697–719. doi: 10.1080/10543400701329489. - DOI - PubMed
    1. Begley CG. Six red flags for suspect work. Nature. 2013;497:433–434. doi: 10.1038/497433a. - DOI - PubMed

Publication types

MeSH terms