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. 2015 Jun 4;3(3):e00535-15.
doi: 10.1128/genomeA.00535-15.

Complete genome sequence of a porcine epidemic diarrhea s gene indel strain isolated in france in december 2014

Béatrice Grasland  1 , Lionel Bigault  2 , Cécilia Bernard  2 , Hélène Quenault  2 , Olivier Toulouse  3 , Christelle Fablet  4 , Nicolas Rose  4 , Fabrice Touzain  2 , Yannick Blanchard  2
Affiliations

Complete genome sequence of a porcine epidemic diarrhea s gene indel strain isolated in france in december 2014

Béatrice Grasland et al. Genome Announc. .

Abstract

We report the first and only case of a porcine epidemic diarrhea (PED) outbreak occurring in December 2014 in northern France, and we show using the full-length genome sequence of the French PED virus (PEDV) isolate that it was a PEDV indel strain close to German PEDV strains recently isolated.

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References

    1. Song D, Park B. 2012. Porcine epidemic diarrhoea virus: a comprehensive review of molecular epidemiology, diagnosis, and vaccines. Virus Genes 44:167–175. doi:10.1007/s11262-012-0713-1. - DOI - PMC - PubMed
    1. Grasland B, Bigault L, Bernard C, Touzain F, Rose N, Blanchard Y. 2014. Preparedness for potential PED emergence in France: development of diagnostic tools, p 53 In Proceedings of the 8th Annual Meeting of EPIZONE. National Veterinary Institute, Frederiksberg, Denmark.
    1. Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114–2120. doi:10.1093/bioinformatics/btu170. - DOI - PMC - PubMed
    1. Li H. 2011. A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics 27:2987–2993. doi:10.1093/bioinformatics/btr509. - DOI - PMC - PubMed
    1. Darling AE, Mau B, Perna NT. 2010. ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5:e11147. doi:10.1371/journal.pone.0011147. - DOI - PMC - PubMed

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