Complete Genome Sequences of Field Isolates of Mycobacterium bovis and Mycobacterium caprae

doi:10.1128/genomeA.00247-15

. 2015 Jun 25;3(3):e00247-15.

doi: 10.1128/genomeA.00247-15.

Complete Genome Sequences of Field Isolates of Mycobacterium bovis and Mycobacterium caprae

Affiliations

¹ jose_delafuente@yahoo.com.
² SaBio, Instituto de Investigación en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Ciudad Real, Spain.
³ Center for Infection and Immunity of Lille (CIIL), INSERM U1019, CNRS UMR 8204, Université de Lille, Institut Pasteur de Lille, Lille, France.
⁴ Oh no sequences! Research Group, Era7 Bioinformatics, Granada, Spain.
⁵ Instituto Vasco de Investigación y Desarrollo Agrario (NEIKER), Departamento de Sanidad Animal, Vizcaya, Spain.

PMID: 26112781
PMCID: PMC4481278
DOI: 10.1128/genomeA.00247-15

Complete Genome Sequences of Field Isolates of Mycobacterium bovis and Mycobacterium caprae

José de la Fuente et al. Genome Announc. 2015.

. 2015 Jun 25;3(3):e00247-15.

doi: 10.1128/genomeA.00247-15.

Affiliations

¹ jose_delafuente@yahoo.com.
² SaBio, Instituto de Investigación en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Ciudad Real, Spain.
³ Center for Infection and Immunity of Lille (CIIL), INSERM U1019, CNRS UMR 8204, Université de Lille, Institut Pasteur de Lille, Lille, France.
⁴ Oh no sequences! Research Group, Era7 Bioinformatics, Granada, Spain.
⁵ Instituto Vasco de Investigación y Desarrollo Agrario (NEIKER), Departamento de Sanidad Animal, Vizcaya, Spain.

PMID: 26112781
PMCID: PMC4481278
DOI: 10.1128/genomeA.00247-15

Abstract

Here we report the complete genome sequences of field isolates of Mycobacterium bovis and the related mycobacterial species, Mycobacterium caprae. The genomes of three M. bovis (MB1, MB3, MB4) and one M. caprae (MB2) field isolates with different virulence, prevalence, and host distribution phenotypes were sequenced.

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Investigation of intra-herd spread of Mycobacterium caprae in cattle by generation and use of a whole-genome sequence.
Broeckl S, Krebs S, Varadharajan A, Straubinger RK, Blum H, Buettner M. Broeckl S, et al. Vet Res Commun. 2017 Jun;41(2):113-128. doi: 10.1007/s11259-017-9679-8. Epub 2017 Feb 13. Vet Res Commun. 2017. PMID: 28194548
Comparative Genomics of Field Isolates of Mycobacterium bovis and M. caprae Provides Evidence for Possible Correlates with Bacterial Viability and Virulence.
de la Fuente J, Díez-Delgado I, Contreras M, Vicente J, Cabezas-Cruz A, Tobes R, Manrique M, López V, Romero B, Bezos J, Dominguez L, Sevilla IA, Garrido JM, Juste R, Madico G, Jones-López E, Gortazar C. de la Fuente J, et al. PLoS Negl Trop Dis. 2015 Nov 19;9(11):e0004232. doi: 10.1371/journal.pntd.0004232. eCollection 2015 Nov. PLoS Negl Trop Dis. 2015. PMID: 26583774 Free PMC article.

References

1. Gortázar C, Delahay RJ, McDonald RA, Boadella M, Wilson GJ, Gavier-Widen D, Acevedo P. 2012. The status of tuberculosis in European wild mammals. Mamm Rev 42:193–206. doi:10.1111/j.1365-2907.2011.00191.x. - DOI
1. Aranaz A, Liébana E, Gómez-Mampaso E, Galán JC, Cousins D, Ortega A, Blázquez J, Baquero F, Mateos A, Súarez G, Domínguez L. 1999. Mycobacterium tuberculosis subsp. caprae subsp. nov.: a taxonomic study of a new member of the Mycobacterium tuberculosis complex isolated from goats in Spain. Int J Syst Evol Bacteriol 49:1263–1273. - PubMed
1. Comas I, Coscolla M, Luo T, Borrell S, Holt KE, Kato-Maeda M, Parkhill J, Malla B, Berg S, Thwaites G, Yeboah-Manu D, Bothamley G, Mei J, Wei L, Bentley S, Harris SR, Niemann S, Diel R, Aseffa A, Gao Q, Young D, Gagneux S. 2013. Out-of-Africa migration and neolithic coexpansion of Mycobacterium tuberculosis with modern humans. Nat Genet 45:1176–1182. doi:10.1038/ng.2744. - DOI - PMC - PubMed
1. Van Soolingen D, Hermans PW, de Haas PE, Soll DR, van Embden JD. 1991. Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis. J Clin Microbiol 29:2578–2586. - PMC - PubMed
1. Magoč T, Salzberg SL. 2011. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27:2957–2963. doi:10.1093/bioinformatics/btr507. - DOI - PMC - PubMed

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[1] Gortázar C, Delahay RJ, McDonald RA, Boadella M, Wilson GJ, Gavier-Widen D, Acevedo P. 2012. The status of tuberculosis in European wild mammals. Mamm Rev 42:193–206. doi:10.1111/j.1365-2907.2011.00191.x. - DOI

[2] Gortázar C, Delahay RJ, McDonald RA, Boadella M, Wilson GJ, Gavier-Widen D, Acevedo P. 2012. The status of tuberculosis in European wild mammals. Mamm Rev 42:193–206. doi:10.1111/j.1365-2907.2011.00191.x. - DOI

[3] Aranaz A, Liébana E, Gómez-Mampaso E, Galán JC, Cousins D, Ortega A, Blázquez J, Baquero F, Mateos A, Súarez G, Domínguez L. 1999. Mycobacterium tuberculosis subsp. caprae subsp. nov.: a taxonomic study of a new member of the Mycobacterium tuberculosis complex isolated from goats in Spain. Int J Syst Evol Bacteriol 49:1263–1273. - PubMed

[4] Aranaz A, Liébana E, Gómez-Mampaso E, Galán JC, Cousins D, Ortega A, Blázquez J, Baquero F, Mateos A, Súarez G, Domínguez L. 1999. Mycobacterium tuberculosis subsp. caprae subsp. nov.: a taxonomic study of a new member of the Mycobacterium tuberculosis complex isolated from goats in Spain. Int J Syst Evol Bacteriol 49:1263–1273. - PubMed

[5] Comas I, Coscolla M, Luo T, Borrell S, Holt KE, Kato-Maeda M, Parkhill J, Malla B, Berg S, Thwaites G, Yeboah-Manu D, Bothamley G, Mei J, Wei L, Bentley S, Harris SR, Niemann S, Diel R, Aseffa A, Gao Q, Young D, Gagneux S. 2013. Out-of-Africa migration and neolithic coexpansion of Mycobacterium tuberculosis with modern humans. Nat Genet 45:1176–1182. doi:10.1038/ng.2744. - DOI - PMC - PubMed

[6] Comas I, Coscolla M, Luo T, Borrell S, Holt KE, Kato-Maeda M, Parkhill J, Malla B, Berg S, Thwaites G, Yeboah-Manu D, Bothamley G, Mei J, Wei L, Bentley S, Harris SR, Niemann S, Diel R, Aseffa A, Gao Q, Young D, Gagneux S. 2013. Out-of-Africa migration and neolithic coexpansion of Mycobacterium tuberculosis with modern humans. Nat Genet 45:1176–1182. doi:10.1038/ng.2744. - DOI - PMC - PubMed

[7] Van Soolingen D, Hermans PW, de Haas PE, Soll DR, van Embden JD. 1991. Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis. J Clin Microbiol 29:2578–2586. - PMC - PubMed

[8] Van Soolingen D, Hermans PW, de Haas PE, Soll DR, van Embden JD. 1991. Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis. J Clin Microbiol 29:2578–2586. - PMC - PubMed

[9] Magoč T, Salzberg SL. 2011. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27:2957–2963. doi:10.1093/bioinformatics/btr507. - DOI - PMC - PubMed

[10] Magoč T, Salzberg SL. 2011. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27:2957–2963. doi:10.1093/bioinformatics/btr507. - DOI - PMC - PubMed

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Complete Genome Sequences of Field Isolates of Mycobacterium bovis and Mycobacterium caprae

Affiliations

Complete Genome Sequences of Field Isolates of Mycobacterium bovis and Mycobacterium caprae

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References

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