IMA Genome-F 4: Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata

Brenda D Wingfield¹, Peter K Ades², Fatima A Al-Naemi³, Lisa A Beirn⁴, Wubetu Bihon⁵, Jo Anne Crouch⁶, Z Wilhelm de Beer⁷, Lieschen De Vos¹, Tuan A Duong¹, Christopher J Fields⁸, Gerda Fourie⁷, Aquillah M Kanzi¹, Martha Malapi-Wight⁶, Sarah J Pethybridge⁹, Osman Radwan¹⁰, Gloria Rendon⁸, Bernard Slippers¹, Quentin C Santana¹, Emma T Steenkamp⁷, Paul W J Taylor¹¹, Niloofar Vaghefi⁹, Nicolaas A van der Merwe¹, Daniel Veltri¹², Michael J Wingfield⁷

Affiliations

¹ Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. Bag X20, Pretoria 0028, South Africa;
² Department of Forest and Ecosystem Science, The University of Melbourne, Victoria, 3010, Australia.
³ Department of Biological and Environmental Sciences, College of Arts and Sciences, Qatar University, Doha, Qatar.
⁴ Department of Plant Biology and Pathology, Rutgers University, 59 Dudley Road, New Brunswick, NJ 08901, USA.
⁵ Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. bag x20, Pretoria 0028, South Africa ; Agricultural Research Council, Vegetable and Ornamental Plant Institute, P. Bag X293, Pretoria 0001, South Africa.
⁶ Systematic Mycology and Microbiology Laboratory, U.S. Department of Agriculture (USDA), Agricultural Research Service (ARS), Beltsville, MD 20705, USA.
⁷ Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. bag x20, Pretoria 0028, South Africa.
⁸ High Performance Biological Computing Group, Roy J. Carver Biotechnology Center/W.M. Keck Center, University of Illinois at Urbana-Champaign, IL, USA.
⁹ School of Integrative Plant Sciences, Plant Pathology & Plant-Microbe Biology Section, Cornell University, Geneva, NY, 14456, USA.
¹⁰ Department of Natural Resources and Environmental Sciences, University of Illinois at Urbana-Champaign, IL, USA and Department of Plant Production, College of Technology, Zagazig University, Sharkia, Egypt.
¹¹ Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Victoria, 3010, Australia.
¹² Systematic Mycology and Microbiology Laboratory, U.S. Department of Agriculture (USDA), Agricultural Research Service (ARS), Beltsville, MD 20705, USA ; Oak Ridge Laboratories ARS Research Participation Program, USDA-ARS, Beltsville, MD 20705, USA.

PMID: 26203426
PMCID: PMC4500086
DOI: 10.5598/imafungus.2015.06.01.15

IMA Genome-F 4: Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata

Brenda D Wingfield et al. IMA Fungus. 2015 Jun.

. 2015 Jun;6(1):233-48.

doi: 10.5598/imafungus.2015.06.01.15. Epub 2015 Jun 22.

Authors

Affiliations

¹ Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. Bag X20, Pretoria 0028, South Africa;
² Department of Forest and Ecosystem Science, The University of Melbourne, Victoria, 3010, Australia.
³ Department of Biological and Environmental Sciences, College of Arts and Sciences, Qatar University, Doha, Qatar.
⁴ Department of Plant Biology and Pathology, Rutgers University, 59 Dudley Road, New Brunswick, NJ 08901, USA.
⁵ Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. bag x20, Pretoria 0028, South Africa ; Agricultural Research Council, Vegetable and Ornamental Plant Institute, P. Bag X293, Pretoria 0001, South Africa.
⁶ Systematic Mycology and Microbiology Laboratory, U.S. Department of Agriculture (USDA), Agricultural Research Service (ARS), Beltsville, MD 20705, USA.
⁷ Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. bag x20, Pretoria 0028, South Africa.
⁸ High Performance Biological Computing Group, Roy J. Carver Biotechnology Center/W.M. Keck Center, University of Illinois at Urbana-Champaign, IL, USA.
⁹ School of Integrative Plant Sciences, Plant Pathology & Plant-Microbe Biology Section, Cornell University, Geneva, NY, 14456, USA.
¹⁰ Department of Natural Resources and Environmental Sciences, University of Illinois at Urbana-Champaign, IL, USA and Department of Plant Production, College of Technology, Zagazig University, Sharkia, Egypt.
¹¹ Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Victoria, 3010, Australia.
¹² Systematic Mycology and Microbiology Laboratory, U.S. Department of Agriculture (USDA), Agricultural Research Service (ARS), Beltsville, MD 20705, USA ; Oak Ridge Laboratories ARS Research Participation Program, USDA-ARS, Beltsville, MD 20705, USA.

PMID: 26203426
PMCID: PMC4500086
DOI: 10.5598/imafungus.2015.06.01.15

Abstract

The genomes of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygami, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata are presented in this genome announcement. These seven genomes are from endophytes, plant pathogens and economically important fungal species. The genome sizes range from 26.6 Mb in the case of Leptographium lundbergii to 44 Mb for Chrysoporthe austroafricana. The availability of these genome data will provide opportunities to resolve longstanding questions regarding the taxonomy of species in these genera, and may contribute to our understanding of the lifestyles through comparative studies with closely related organisms.

Keywords: basal stalk and root rot; black scorch disease; blue stain; canker pathogen; pink patch disease; ray blight.

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IMA Genome-F 4: Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata

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IMA Genome-F 4: Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata

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