Population genetic studies in the genomic sequencing era
- PMID: 26228473
- PMCID: PMC4790258
- DOI: 10.13918/j.issn.2095-8137.2015.4.223
Population genetic studies in the genomic sequencing era
Abstract
Recent advances in high-throughput sequencing technologies have revolutionized the field of population genetics. Data now routinely contain genomic level polymorphism information, and the low cost of DNA sequencing enables researchers to investigate tens of thousands of subjects at a time. This provides an unprecedented opportunity to address fundamental evolutionary questions, while posing challenges on traditional population genetic theories and methods. This review provides an overview of the recent methodological developments in the field of population genetics, specifically methods used to infer ancient population history and investigate natural selection using large-sample, large-scale genetic data. Several open questions are also discussed at the end of the review.
Keywords: Allele frequency spectrum; Demography; Linkage disequilibrium; Natural selection; Population genetic inference.
References
-
- Beall CM, Cavalleri GL, Deng LB, Elston RC, Gao Y, Knight J, Li CH, Li JC, Liang Y, McCormack M, Montgomery HE, Pan H, Robbins PA, Shianna KV, Tam SC, Tsering N, Veeramah KR, Wang W, Wangdui P, Weale ME, Xu YM, Xu Z, Yang L, Zaman MJ, Zeng CQ, Zhang L, Zhang XL, Zhaxi P, Zheng YT.2010. Natural selection on EPAS1 (HIF2α) associated with low hemoglobin concentration in Tibetan highlanders.Proceedings of the National Academy of Sciences of the United States of America, 107(25): 11459-11464. - PMC - PubMed
-
- Burgess R, Yang ZH.2008. Estimation of hominoid ancestral population sizes under Bayesian coalescent models incorporating mutation rate variation and sequencing errors.Molecular Biology and Evolution, 25(9): 1979-1994. - PubMed
-
- Cann RL, Stoneking M, Wilson AC.1987. Mitochondrial DNA and human evolution.Nature, 325(6099): 31-36. - PubMed
-
- Cavalli-Sforza LL, Bodmer WF.1971. The Genetics of Human Populations. San Francisco: Dover Publications.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources