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Comment

. 2016 Feb;13(2):123-4.

doi: 10.1038/nmeth.3738.

Illuminating translation with ribosome profiling spectra

Pavel V Baranov¹, Audrey M Michel¹

Affiliations

PMID: 26820545
DOI: 10.1038/nmeth.3738

Comment

Illuminating translation with ribosome profiling spectra

Pavel V Baranov et al. Nat Methods. 2016 Feb.

. 2016 Feb;13(2):123-4.

doi: 10.1038/nmeth.3738.

Authors

Pavel V Baranov¹, Audrey M Michel¹

Affiliation

¹ School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland.

PMID: 26820545
DOI: 10.1038/nmeth.3738

No abstract available

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Comment on

Detecting actively translated open reading frames in ribosome profiling data.
Calviello L, Mukherjee N, Wyler E, Zauber H, Hirsekorn A, Selbach M, Landthaler M, Obermayer B, Ohler U. Calviello L, et al. Nat Methods. 2016 Feb;13(2):165-70. doi: 10.1038/nmeth.3688. Epub 2015 Dec 14. Nat Methods. 2016. PMID: 26657557

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References

1. Science. 2009 Apr 10;324(5924):218-23 - PubMed
1. Nat Methods. 2016 Feb;13(2):165-70 - PubMed
1. Genome Res. 2012 Nov;22(11):2219-29 - PubMed
1. Cell Rep. 2014 Sep 11;8(5):1365-79 - PubMed
1. Genome Biol. 2015 May 06;16:90 - PubMed

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